BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1034
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL582994.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000495.1|  Homo sapiens chromosome 5, whole genome shot...    28     907
gb|DS990658.1|  Homo sapiens SCAF_1112675837357 genomic scaf...    28     907
gb|CH003452.1|  Homo sapiens chromosome 5, whole genome shot...    28     907
ref|NW_001838884.2|  Homo sapiens chromosome 3 genomic conti...    28     907
ref|NW_001838952.2|  Homo sapiens chromosome 5 genomic conti...    28     907
ref|NW_922751.1|  Homo sapiens chromosome 5 genomic contig, ...    28     907
ref|NT_034772.6|  Homo sapiens chromosome 5 genomic contig, ...    28     907
ref|NC_000005.9|  Homo sapiens chromosome 5, GRCh37.p2 prima...    28     907
ref|AC_000137.1|  Homo sapiens chromosome 5, alternate assem...    28     907
ref|AC_000135.1|  Homo sapiens chromosome 3, alternate assem...    28     907
ref|AC_000048.1|  Homo sapiens chromosome 5, alternate assem...    28     907

1_0          1         tgggggaggagattaggttaa 21
GL582994     20960976   ..............a..... 20960957
CM000495     100119895  ..............a..... 100119914
DS990658     33856975   ..............a..... 33856956
CH003452     100371996  ..............a..... 100372015
NW_001838884 7379259   .........t..........  7379278
NW_001838952 33857195   ..............a..... 33857176
NW_922751    5507033    ..............a..... 5507052
NT_034772    13256941   ..............a..... 13256960
NC_000005    104943069  ..............a..... 104943088
AC_000137    100119513  ..............a..... 100119532
AC_000135    184049772 .........t..........  184049753
AC_000048    100885862  ..............a..... 100885881

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 27,070,696
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 1000.0: 12
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)