BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1055
         (19 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000498.1|  Homo sapiens chromosome 8, whole genome shot...    29     422
gb|DS990732.1|  Homo sapiens SCAF_1112675837065 genomic scaf...    29     422
gb|CH003503.1|  Homo sapiens chromosome 8, whole genome shot...    29     422
gb|CH003455.1|  Homo sapiens chromosome 8, whole genome shot...    29     422
ref|NW_001839126.2|  Homo sapiens chromosome 8 genomic conti...    29     422
ref|NW_923907.1|  Homo sapiens chromosome 8 genomic contig, ...    29     422
ref|AC_000140.1|  Homo sapiens chromosome 8, alternate assem...    29     422
ref|AC_000051.1|  Homo sapiens chromosome 8, alternate assem...    29     422

1_0          1        gggaggagttgggggagga 19
CM000498     19838382 ................... 19838400
DS990732     328286   ................... 328268
CH003503     20879805 ................... 20879823
CH003455     19989056 ................... 19989074
NW_001839126 328280   ................... 328262
NW_923907    8827536  ................... 8827554
AC_000140    19838520 ................... 19838538
AC_000051    20259698 ................... 20259716

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 25,942,398
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 1000.0: 8
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)