BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1080
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000493.1|  Homo sapiens chromosome 3, whole genome shot...    28     907
gb|GL583009.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|DS990653.1|  Homo sapiens SCAF_1112675837330 genomic scaf...    28     907
gb|CH003450.1|  Homo sapiens chromosome 3, whole genome shot...    28     907
ref|NW_001838884.2|  Homo sapiens chromosome 3 genomic conti...    28     907
ref|NW_921807.1|  Homo sapiens chromosome 3 genomic contig, ...    28     907
ref|NT_005612.16|  Homo sapiens chromosome 3 genomic contig,...    28     907
ref|NC_000003.11|  Homo sapiens chromosome 3, GRCh37.p2 prim...    28     907
ref|AC_000135.1|  Homo sapiens chromosome 3, alternate assem...    28     907
ref|AC_000046.1|  Homo sapiens chromosome 3, alternate assem...    28     907

1_0          2         gctgctatgcctcatcttct 21
CM000493     172109359 ..............g..... 172109340
GL583009     16357204  ..............g..... 16357185
DS990653     19319100  ..............g..... 19319119
CH003450     172762539 ..............g..... 172762520
NW_001838884 19319398  ..............g..... 19319417
NW_921807    81318669  ..............g..... 81318650
NT_005612    81226850  ..............g..... 81226831
NC_000003    174731704 ..............g..... 174731685
AC_000135    172109633 ..............g..... 172109614
AC_000046    173132999 ..............g..... 173132980

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 25,983,936
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 1000.0: 10
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)