BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1081
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL582987.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000508.1|  Homo sapiens chromosome 18, whole genome sho...    28     907
gb|DS990753.1|  Homo sapiens SCAF_1112675836983 genomic scaf...    28     907
gb|CH003513.1|  Homo sapiens chromosome 18, whole genome sho...    28     907
gb|CH003465.1|  Homo sapiens chromosome 18, whole genome sho...    28     907
ref|NW_927106.1|  Homo sapiens chromosome 18 genomic contig,...    28     907
ref|NW_001838468.1|  Homo sapiens chromosome 18 genomic cont...    28     907
ref|NT_010966.14|  Homo sapiens chromosome 18 genomic contig...    28     907
ref|NC_000018.9|  Homo sapiens chromosome 18, GRCh37.p2 prim...    28     907
ref|AC_000150.1|  Homo sapiens chromosome 18, alternate asse...    28     907
ref|AC_000061.1|  Homo sapiens chromosome 18, alternate asse...    28     907

1_0          2        gctcctctgccgatccatac 21
GL582987     952521   .................g.. 952540
CM000508     42367643 .................g.. 42367662
DS990753     966849   .................g.. 966868
CH003513     46781661 .................g.. 46781680
CH003465     41341512 .................g.. 41341531
NW_927106    960920   .................g.. 960939
NW_001838468 966801   .................g.. 966820
NT_010966    27007120 .................g.. 27007139
NC_000018    45518018 .................g.. 45518037
AC_000150    42367702 .................g.. 42367721
AC_000061    42367337 .................g.. 42367356

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 17,995,890
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)