BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1097
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000492.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
gb|GL582994.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583304.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000495.1|  Homo sapiens chromosome 5, whole genome shot...    28     907
gb|DS990658.1|  Homo sapiens SCAF_1112675837357 genomic scaf...    28     907
gb|DS990947.1|  Homo sapiens SCAF_1112675837242 genomic scaf...    28     907
gb|CH003497.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
gb|CH003500.1|  Homo sapiens chromosome 5, whole genome shot...    28     907
gb|CH003449.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
gb|CH003452.1|  Homo sapiens chromosome 5, whole genome shot...    28     907
ref|NW_928052.1|  Homo sapiens chromosome 2 genomic contig, ...    28     907
ref|NW_001838952.2|  Homo sapiens chromosome 5 genomic conti...    28     907
ref|NW_922751.1|  Homo sapiens chromosome 5 genomic contig, ...    28     907
ref|NT_034772.6|  Homo sapiens chromosome 5 genomic contig, ...    28     907
ref|NT_022171.15|  Homo sapiens chromosome 2 genomic contig,...    28     907
ref|NT_030059.13|  Homo sapiens chromosome 10 genomic contig...    28     907
ref|NW_001838821.1|  Homo sapiens chromosome 2 genomic conti...    28     907
ref|NC_000005.9|  Homo sapiens chromosome 5, GRCh37.p2 prima...    28     907
ref|NC_000002.11|  Homo sapiens chromosome 2, GRCh37.p2 prim...    28     907
ref|NC_000010.10|  Homo sapiens chromosome 10, GRCh37.p2 pri...    28     907
ref|AC_000137.1|  Homo sapiens chromosome 5, alternate assem...    28     907
ref|AC_000134.1|  Homo sapiens chromosome 2, alternate assem...    28     907
ref|AC_000048.1|  Homo sapiens chromosome 5, alternate assem...    28     907
ref|AC_000045.1|  Homo sapiens chromosome 2, alternate assem...    28     907

1_0          2         aacaaacaaacagcgatgaa 21
CM000492     102007892 ..............c..... 102007873
GL582994     13755770  ................a... 13755789
GL583304     109449    ..............c..... 109468
CM000495     107394027 ................a... 107394008
DS990658     26582843  ................a... 26582862
DS990947     1214474   ..............c..... 1214455
CH003497     107244512 ..............c..... 107244493
CH003497     108192469 ..............c..... 108192488
CH003500     112628521 ................a... 112628502
CH003449     100940112 ..............c..... 100940093
CH003452     107614834 ................a... 107614815
NW_928052    10096024  ..............c..... 10096005
NW_001838952 26583079  ................a... 26583098
NW_922751    12781269  ................a... 12781250
NT_034772    20528417  ................a... 20528398
NT_022171    13006166  ..............c..... 13006147
NT_030059    39974964  ..............a..... 39974945
NW_001838821 1214472   ..............c..... 1214453
NC_000005    112214545 ................a... 112214526
NC_000002    108332337 ..............c..... 108332318
NC_000010    89170500  ..............a..... 89170481
AC_000137    107393629 ................a... 107393610
AC_000134    102007643 ..............c..... 102007624
AC_000048    108160098 ................a... 108160079
AC_000045    102541695 ..............c..... 102541676

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 35,793,176
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 1000.0: 24
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 25
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)