BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1112
(20 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|GL582989.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583014.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000497.1| Homo sapiens chromosome 7, whole genome shot... 28 907
gb|DS990666.1| Homo sapiens SCAF_1112675837326 genomic scaf... 28 907
gb|DS990687.1| Homo sapiens SCAF_1112675837132 genomic scaf... 28 907
gb|CH003502.1| Homo sapiens chromosome 7, whole genome shot... 28 907
gb|DS486028.1| Homo sapiens SCAF_1103279188381 genomic scaf... 28 907
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003454.1| Homo sapiens chromosome 7, whole genome shot... 28 907
tpg|BL000002.1| TPA: Homo sapiens chromosome 7 28 907
ref|NW_001839071.2| Homo sapiens chromosome 7 genomic conti... 28 907
ref|NW_001838878.1| Homo sapiens chromosome 3 genomic conti... 28 907
ref|NW_921651.1| Homo sapiens chromosome 3 genomic contig, ... 28 907
ref|NW_923640.1| Homo sapiens chromosome 7 genomic contig, ... 28 907
ref|NT_007933.15| Homo sapiens chromosome 7 genomic contig,... 28 907
ref|NT_022459.15| Homo sapiens chromosome 3 genomic contig,... 28 907
ref|NT_079596.2| Homo sapiens chromosome 7 genomic contig, ... 28 907
ref|NC_000007.13| Homo sapiens chromosome 7, GRCh37.p2 prim... 28 907
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 907
ref|AC_000139.1| Homo sapiens chromosome 7, alternate assem... 28 907
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000068.1| Homo sapiens chromosome 7, alternate assem... 28 907
ref|AC_000050.1| Homo sapiens chromosome 7, alternate assem... 28 907
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 907
1_0 1 gagagatatgaagacacaac 20
CM000493 69894317 ....a............... 69894336
GL582989 5586774 ....a............... 5586755
GL583014 6612367 ...t................ 6612348
CM000497 107297330 ...t................ 107297311
DS990666 18357507 ...t................ 18357526
DS990687 3626588 ....a............... 3626607
CH003502 102636608 ...t................ 102636589
DS486028 18357679 ...t................ 18357698
CH003498 79662735 ....a............... 79662754
CH003450 69990460 ....a............... 69990479
CH003454 108192642 ...t................ 108192623
BL000002 112415879 ...t................ 112415860
NW_001839071 18357679 ...t................ 18357698
NW_001838878 3626736 ....a............... 3626755
NW_921651 69822083 ....a............... 69822102
NW_923640 10499012 ...t................ 10498993
NT_007933 50960385 ...t................ 50960366
NT_022459 3624489 ....a............... 3624508
NT_079596 12331612 ...t................ 12331593
NC_000007 112927542 ...t................ 112927523
NC_000003 69894759 ....a............... 69894778
AC_000139 107296835 ...t................ 107296816
AC_000135 69894497 ....a............... 69894516
AC_000068 112296044 ...t................ 112296025
AC_000050 107740261 ...t................ 107740242
AC_000046 69822083 ....a............... 69822102
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,129,793
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 1000.0: 26
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 26
Length of query: 20
Length of database: 31,910,071,267
Length adjustment: 14
Effective length of query: 6
Effective length of database: 31,910,050,337
Effective search space: 191460302022
Effective search space used: 191460302022
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)