BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1120
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 29 348
gb|GL583062.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|DS990740.1| Homo sapiens SCAF_1112675836367 genomic scaf... 29 348
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 29 348
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 29 348
ref|NW_927719.1| Homo sapiens chromosome 2 genomic contig, ... 29 348
ref|NW_001838766.1| Homo sapiens chromosome 2 genomic conti... 29 348
ref|NT_005334.16| Homo sapiens chromosome 2 genomic contig,... 29 348
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 29 348
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 29 348
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 29 348
1_0 1 gctcagtttactagtgccatt 21
CM000492 14656300 .........c........... 14656320
GL583062 1470204 .........c........... 1470184
DS990740 6901530 .........c........... 6901550
CH003497 15720597 .........c........... 15720617
CH003449 14616261 .........c........... 14616281
NW_927719 14655858 .........c........... 14655878
NW_001838766 6901525 .........c........... 6901545
NT_005334 9687145 .........c........... 9687165
NC_000002 14805933 .........c........... 14805953
AC_000134 14656395 .........c........... 14656415
AC_000045 14723923 .........c........... 14723943
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 21,375,431
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)