BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1120
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000492.1|  Homo sapiens chromosome 2, whole genome shot...    29     348
gb|GL583062.1|  Homo sapiens unplaced genomic scaffold scaff...    29     348
gb|DS990740.1|  Homo sapiens SCAF_1112675836367 genomic scaf...    29     348
gb|CH003497.1|  Homo sapiens chromosome 2, whole genome shot...    29     348
gb|CH003449.1|  Homo sapiens chromosome 2, whole genome shot...    29     348
ref|NW_927719.1|  Homo sapiens chromosome 2 genomic contig, ...    29     348
ref|NW_001838766.1|  Homo sapiens chromosome 2 genomic conti...    29     348
ref|NT_005334.16|  Homo sapiens chromosome 2 genomic contig,...    29     348
ref|NC_000002.11|  Homo sapiens chromosome 2, GRCh37.p2 prim...    29     348
ref|AC_000134.1|  Homo sapiens chromosome 2, alternate assem...    29     348
ref|AC_000045.1|  Homo sapiens chromosome 2, alternate assem...    29     348

1_0          1        gctcagtttactagtgccatt 21
CM000492     14656300 .........c........... 14656320
GL583062     1470204  .........c........... 1470184
DS990740     6901530  .........c........... 6901550
CH003497     15720597 .........c........... 15720617
CH003449     14616261 .........c........... 14616281
NW_927719    14655858 .........c........... 14655878
NW_001838766 6901525  .........c........... 6901545
NT_005334    9687145  .........c........... 9687165
NC_000002    14805933 .........c........... 14805953
AC_000134    14656395 .........c........... 14656415
AC_000045    14723923 .........c........... 14723943

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 21,375,431
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)