BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1121
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 28 907
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|GL582983.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583009.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583045.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|CM000513.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|DS990653.1| Homo sapiens SCAF_1112675837330 genomic scaf... 28 907
gb|DS990672.1| Homo sapiens SCAF_1112675837227 genomic scaf... 28 907
gb|DS990760.1| Homo sapiens SCAF_1112675837258 genomic scaf... 28 907
gb|DS990932.1| Homo sapiens SCAF_1112675837288 genomic scaf... 28 907
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 28 907
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|CH003470.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 28 907
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 907
emb|CT009680.1| Human chromosome X complete sequence 28 907
ref|NW_927727.1| Homo sapiens chromosome X genomic contig, ... 28 907
ref|NW_001838884.2| Homo sapiens chromosome 3 genomic conti... 28 907
ref|NW_001839132.1| Homo sapiens chromosome 8 genomic conti... 28 907
ref|NW_001838847.2| Homo sapiens chromosome 2 genomic conti... 28 907
ref|NW_001842412.2| Homo sapiens chromosome X genomic conti... 28 907
ref|NW_921807.1| Homo sapiens chromosome 3 genomic contig, ... 28 907
ref|NW_923929.1| Homo sapiens chromosome 8 genomic contig, ... 28 907
ref|NW_921507.1| Homo sapiens chromosome 2 genomic contig, ... 28 907
ref|NT_167198.1| Homo sapiens chromosome X genomic contig, ... 28 907
ref|NT_011681.16| Homo sapiens chromosome X genomic contig,... 28 907
ref|NT_008183.19| Homo sapiens chromosome 8 genomic contig,... 28 907
ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig,... 28 907
ref|NT_022135.16| Homo sapiens chromosome 2 genomic contig,... 28 907
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 28 907
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 907
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 907
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 28 907
ref|AC_000155.1| Homo sapiens chromosome X, alternate assem... 28 907
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 28 907
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 28 907
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 28 907
1_0 2 atggttttgggggccaagtc 21
CM000492 108552587 .........a.......... 108552606
CM000493 157578407 ..........a......... 157578426
GL582983 10637391 ..................c. 10637410
GL583009 1903901 ..........a......... 1903920
GL583045 10344045 .........a.......... 10344026
CM000498 53758686 ..................c. 53758705
CM000513 137591912 ..................c. 137591931
DS990653 33850052 ..........a......... 33850033
DS990672 10157694 ..................c. 10157713
DS990760 4920350 .........a.......... 4920331
DS990932 88675 ..................c. 88656
CH003497 115325718 .........a.......... 115325737
CH003498 166128237 ..........a......... 166128218
CH003503 62629621 ..................c. 62629640
CH003518 116258343 ..................c. 116258362
CH003470 143750876 ..................c. 143750857
CH003449 107724067 .........a.......... 107724086
CH003450 157983480 ..........a......... 157983499
CH003455 54077361 ..................c. 54077380
CT009680 147619477 ..................c. 147619496
CT009680 147975832 ..................c. 147975813
NW_927727 2734660 ..................c. 2734679
NW_001838884 33850687 ..........a......... 33850668
NW_001839132 10157653 ..................c. 10157672
NW_001838847 4920431 .........a.......... 4920412
NW_001842412 88668 ..................c. 88649
NW_921807 66787460 ..........a......... 66787479
NW_923929 11398618 ..................c. 11398637
NW_921507 1827963 .........a.......... 1827982
NT_167198 9319 ..................c. 9300
NT_011681 5080554 ..................c. 5080573
NT_008183 10136481 ..................c. 10136500
NT_005612 66674919 ..........a......... 66674938
NT_022135 5981432 .........a.......... 5981451
NC_000023 148637878 ..................c. 148637897
NC_000023 149091381 ..................c. 149091362
NC_000008 58272080 ..................c. 58272099
NC_000003 160179773 ..........a......... 160179792
NC_000002 116232769 .........a.......... 116232788
AC_000155 137591774 ..................c. 137591793
AC_000140 53758885 ..................c. 53758904
AC_000135 157578344 ..........a......... 157578363
AC_000134 108552402 .........a.......... 108552421
AC_000066 148986597 ..................c. 148986616
AC_000051 54265553 ..................c. 54265572
AC_000046 158601790 ..........a......... 158601809
AC_000045 109554591 .........a.......... 109554610
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 27,559,561
Number of extensions: 47
Number of successful extensions: 47
Number of sequences better than 1000.0: 45
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 47
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)