BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1129
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 a... 29 348
gb|CM000514.1| Homo sapiens chromosome Y, whole genome shot... 29 348
gb|CH003519.1| Homo sapiens chromosome Y, whole genome shot... 29 348
gb|CH003471.1| Homo sapiens chromosome Y, whole genome shot... 29 348
ref|NG_004755.2| Homo sapiens chromosome Y palindromes P1, ... 29 348
ref|NT_011903.12| Homo sapiens chromosome Y genomic contig,... 29 348
ref|NT_011875.12| Homo sapiens chromosome Y genomic contig,... 29 348
ref|NW_927740.1| Homo sapiens chromosome Y genomic contig, ... 29 348
ref|NC_000024.9| Homo sapiens chromosome Y, GRCh37.p2 prima... 29 348
ref|AC_000156.1| Homo sapiens chromosome Y, alternate assem... 29 348
ref|AC_000067.1| Homo sapiens chromosome Y, alternate assem... 29 348
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|GL582980.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583001.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583020.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583026.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583073.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000495.1| Homo sapiens chromosome 5, whole genome shot... 28 907
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|CM000502.1| Homo sapiens chromosome 12, whole genome sho... 28 907
gb|DS990653.1| Homo sapiens SCAF_1112675837330 genomic scaf... 28 907
gb|DS990658.1| Homo sapiens SCAF_1112675837357 genomic scaf... 28 907
gb|DS990682.1| Homo sapiens SCAF_1112675837157 genomic scaf... 28 907
gb|DS990715.1| Homo sapiens SCAF_1112675837139 genomic scaf... 28 907
gb|DS990747.1| Homo sapiens SCAF_1112675831035 genomic scaf... 28 907
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003500.1| Homo sapiens chromosome 5, whole genome shot... 28 907
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|CH003507.1| Homo sapiens chromosome 12, whole genome sho... 28 907
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 28 907
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|CH003459.1| Homo sapiens chromosome 12, whole genome sho... 28 907
ref|NW_001838884.2| Homo sapiens chromosome 3 genomic conti... 28 907
ref|NW_001838952.2| Homo sapiens chromosome 5 genomic conti... 28 907
ref|NW_001838900.1| Homo sapiens chromosome 4 genomic conti... 28 907
ref|NW_001839127.1| Homo sapiens chromosome 8 genomic conti... 28 907
ref|NW_921807.1| Homo sapiens chromosome 3 genomic contig, ... 28 907
ref|NW_922784.1| Homo sapiens chromosome 5 genomic contig, ... 28 907
ref|NW_923907.1| Homo sapiens chromosome 8 genomic contig, ... 28 907
ref|NW_922073.1| Homo sapiens chromosome 4 genomic contig, ... 28 907
ref|NW_925351.1| Homo sapiens chromosome 12 genomic contig,... 28 907
ref|NT_167187.1| Homo sapiens chromosome 8 genomic contig, ... 28 907
ref|NT_034772.6| Homo sapiens chromosome 5 genomic contig, ... 28 907
ref|NT_006316.16| Homo sapiens chromosome 4 genomic contig,... 28 907
ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig,... 28 907
ref|NT_029419.12| Homo sapiens chromosome 12 genomic contig... 28 907
ref|NW_001838057.1| Homo sapiens chromosome 12 genomic cont... 28 907
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 907
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 28 907
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 28 907
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 907
ref|NC_000012.11| Homo sapiens chromosome 12, GRCh37.p2 pri... 28 907
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 28 907
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000144.1| Homo sapiens chromosome 12, alternate asse... 28 907
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 28 907
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000055.1| Homo sapiens chromosome 12, alternate asse... 28 907
1_0 1 aaagaatttggagctactgtg 21
NG_004636 366901 .......a............. 366881
NG_004636 506916 .......a............. 506936
CM000514 14440632 .......a............. 14440612
CM000514 18188630 .......a............. 18188610
CH003519 18188283 .......a............. 18188263
CH003471 11975477 .......a............. 11975497
NG_004755 2239889 .......a............. 2239869
NG_004755 3808470 .......a............. 3808490
NT_011903 2245494 .......a............. 2245474
NT_011903 3814075 .......a............. 3814095
NT_011875 6196298 .......a............. 6196278
NT_011875 6336313 .......a............. 6336333
NW_927740 1592344 .......a............. 1592364
NC_000024 19994876 .......a............. 19994856
NC_000024 20134891 .......a............. 20134911
NC_000024 26196922 .......a............. 26196902
NC_000024 27765503 .......a............. 27765523
AC_000156 14441365 .......a............. 14441345
AC_000156 18189378 .......a............. 18189358
AC_000067 5482160 .......a............. 5482180
AC_000067 10363046 .......a............. 10363026
CM000493 189652643 ..............c..... 189652662
CM000494 26849209 .............t...... 26849228
GL582980 10575361 .........t.......... 10575342
GL583001 2914801 ..............c..... 2914782
GL583020 4307526 .............t...... 4307507
GL583026 377398 ..................a. 377417
GL583073 1581009 .........a.......... 1581028
CM000495 131937092 .........t.......... 131937073
CM000498 27414762 ..................a. 27414781
CM000502 39153665 .........a.......... 39153684
DS990653 1775816 ..............c..... 1775797
DS990658 2039778 .........t.......... 2039797
DS990682 18128280 .............t...... 18128299
DS990715 1585684 .........a.......... 1585703
DS990747 7247995 ..................a. 7248014
CH003498 200190612 ..............c..... 200190631
CH003499 28554416 .............t...... 28554435
CH003500 140310881 .........t.......... 140310862
CH003503 36892565 ..................a. 36892584
CH003507 44213202 .........a.......... 44213183
CH003450 190277555 ..............c..... 190277574
CH003451 27183284 .............t...... 27183303
CH003452 134123672 .........t.......... 134123653
CH003455 27545829 ..................a. 27545848
CH003459 39357650 .........a.......... 39357669
NW_001838884 1775888 ..............c..... 1775869
NW_001838952 2039640 .........t.......... 2039659
NW_001838900 18128288 .............t...... 18128307
NW_001839127 7247892 ..................a. 7247911
NW_921807 98867094 ..............c..... 98867113
NW_922784 10501824 .........t.......... 10501805
NW_923907 16397414 ..................a. 16397433
NW_922073 18087512 .............t...... 18087531
NW_925351 4474245 .........a.......... 4474264
NT_167187 16727906 ..................a. 16727925
NT_034772 45062725 .........t.......... 45062706
NT_006316 18693078 .............t...... 18693097
NT_005612 98748426 ..............c..... 98748445
NT_029419 4268815 .........a.......... 4268834
NW_001838057 1585753 .........a.......... 1585772
NC_000008 28869760 ..................a. 28869779
NC_000005 136748853 .........t.......... 136748834
NC_000004 27511281 .............t...... 27511300
NC_000003 192253280 ..............c..... 192253299
NC_000012 42125509 .........a.......... 42125528
AC_000140 27414791 ..................a. 27414810
AC_000137 131937068 .........t.......... 131937049
AC_000136 26848955 .............t...... 26848974
AC_000135 189653143 ..............c..... 189653162
AC_000144 39153482 .........a.......... 39153501
AC_000051 27829576 ..................a. 27829595
AC_000048 132873808 .........t.......... 132873789
AC_000047 27960770 .............t...... 27960789
AC_000046 190681424 ..............c..... 190681443
AC_000055 40928339 .........a.......... 40928358
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 32,921,239
Number of extensions: 76
Number of successful extensions: 76
Number of sequences better than 1000.0: 66
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 76
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)