BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1137
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582993.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|CM000496.1| Homo sapiens chromosome 6, whole genome shot... 29 348
gb|DS990690.1| Homo sapiens SCAF_1112675837071 genomic scaf... 29 348
gb|CH003501.1| Homo sapiens chromosome 6, whole genome shot... 29 348
gb|CH003453.1| Homo sapiens chromosome 6, whole genome shot... 29 348
ref|NW_001838973.1| Homo sapiens chromosome 6 genomic conti... 29 348
ref|NW_922984.1| Homo sapiens chromosome 6 genomic contig, ... 29 348
ref|NT_007592.15| Homo sapiens chromosome 6 genomic contig,... 29 348
ref|NC_000006.11| Homo sapiens chromosome 6, GRCh37.p2 prim... 29 348
ref|AC_000138.1| Homo sapiens chromosome 6, alternate assem... 29 348
ref|AC_000049.1| Homo sapiens chromosome 6, alternate assem... 29 348
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 28 907
gb|GL582985.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583210.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583244.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|DS990659.1| Homo sapiens SCAF_1112675837198 genomic scaf... 28 907
gb|DS990664.1| Homo sapiens SCAF_1112675837102 genomic scaf... 28 907
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 28 907
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 28 907
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 907
ref|NW_927128.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NW_001839136.1| Homo sapiens chromosome 8 genomic conti... 28 907
ref|NW_001838533.2| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NW_923984.1| Homo sapiens chromosome 8 genomic contig, ... 28 907
ref|NW_921618.1| Homo sapiens chromosome 2 genomic contig, ... 28 907
ref|NT_008046.16| Homo sapiens chromosome 8 genomic contig,... 28 907
ref|NT_005416.13| Homo sapiens chromosome 2 genomic contig,... 28 907
ref|NT_167186.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 907
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 907
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 28 907
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 28 907
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 907
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 28 907
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 907
1_0 1 gcctccaagctgtgccttggg 21
GL582993 14885902 ..............t...... 14885922
CM000496 15288096 ..............t...... 15288116
DS990690 11632906 ..............t...... 11632926
CH003501 16006163 ..............t...... 16006183
CH003453 15231857 ..............t...... 15231877
NW_001838973 11632760 ..............t...... 11632780
NW_922984 14974308 ..............t...... 14974328
NT_007592 15281113 ..............t...... 15281133
NC_000006 15341113 ..............t...... 15341133
AC_000138 15287723 ..............t...... 15287743
AC_000049 16579052 ..............t...... 16579072
CM000491 142674567 .............a...... 142674586
CM000491 198735106 ...........a........ 198735125
CM000492 234754873 ...........a........ 234754854
GL582985 22229637 .............a...... 22229656
GL583210 517727 ...........a........ 517708
GL583244 37552 ...........a........ 37571
CM000498 119135116 .............a...... 119135135
DS990659 37077136 .............a...... 37077155
DS990664 34429948 .............a...... 34429929
CH003496 202906067 ...........a........ 202906086
CH003497 248479727 ...........a........ 248479746
CH003503 124412912 .............a...... 124412931
CH003448 200960145 ...........a........ 200960164
CH003449 233867928 ...........a........ 233867909
CH003455 119323922 .............a...... 119323941
NW_927128 3991370 ...........a........ 3991389
NW_001839136 37076632 .............a...... 37076651
NW_001838533 34429677 .............a...... 34429658
NW_923984 36963867 .............a...... 36963886
NW_921618 47585436 ...........a........ 47585417
NT_008046 37083020 .............a...... 37083039
NT_005416 2196918 ...........a........ 2196899
NT_167186 21737743 ...........a........ 21737762
NC_000001 228219964 ...........a........ 228219983
NC_000008 123809471 .............a...... 123809490
NC_000002 243006050 ...........a........ 243006031
AC_000140 119135108 .............a...... 119135127
AC_000134 234754849 ...........a........ 234754830
AC_000133 142675574 .............a...... 142675593
AC_000133 198736092 ...........a........ 198736111
AC_000051 119998549 .............a...... 119998568
AC_000045 236670906 ...........a........ 236670887
AC_000044 201410200 ...........a........ 201410219
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 25,380,294
Number of extensions: 44
Number of successful extensions: 44
Number of sequences better than 1000.0: 42
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 44
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)