BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1140
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583029.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000496.1|  Homo sapiens chromosome 6, whole genome shot...    28     907
gb|DS990678.1|  Homo sapiens SCAF_1112675837219 genomic scaf...    28     907
gb|DS486040.1|  Homo sapiens SCAF_1103279188274 genomic scaf...    28     907
gb|CH003501.1|  Homo sapiens chromosome 6, whole genome shot...    28     907
gb|CH003453.1|  Homo sapiens chromosome 6, whole genome shot...    28     907
ref|NW_001838987.1|  Homo sapiens chromosome 6 genomic conti...    28     907
ref|NW_923184.1|  Homo sapiens chromosome 6 genomic contig, ...    28     907
ref|NT_007299.13|  Homo sapiens chromosome 6 genomic contig,...    28     907
ref|NC_000006.11|  Homo sapiens chromosome 6, GRCh37.p2 prim...    28     907
ref|AC_000138.1|  Homo sapiens chromosome 6, alternate assem...    28     907
ref|AC_000049.1|  Homo sapiens chromosome 6, alternate assem...    28     907

1_0          1        aagatccagcatctagagac 20
GL583029     13276769 ............t....... 13276788
CM000496     82302308 ............t....... 82302327
DS990678     14541072 ............t....... 14541091
DS486040     14541271 ............t....... 14541290
CH003501     84716966 ............t....... 84716985
CH003453     81701150 ............t....... 81701169
NW_001838987 14480626 ............t....... 14480645
NW_923184    17575128 ............t....... 17575147
NT_007299    23193051 ............t....... 23193070
NC_000006    85073217 ............t....... 85073236
AC_000138    82302424 ............t....... 82302443
AC_000049    85506524 ............t....... 85506543

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 22,575,397
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 1000.0: 12
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)