BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1141
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 28 907
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|GL583057.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583163.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583241.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000501.1| Homo sapiens chromosome 11, whole genome sho... 28 907
gb|CM000506.1| Homo sapiens chromosome 16, whole genome sho... 28 907
gb|DS990653.1| Homo sapiens SCAF_1112675837330 genomic scaf... 28 907
gb|DS990670.1| Homo sapiens SCAF_1112675837213 genomic scaf... 28 907
gb|DS990726.1| Homo sapiens SCAF_1112675836616 genomic scaf... 28 907
gb|DS990888.1| Homo sapiens SCAF_1112675837176 genomic scaf... 28 907
gb|DS990981.1| Homo sapiens SCAF_1112675831224 genomic scaf... 28 907
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 28 907
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003506.1| Homo sapiens chromosome 11, whole genome sho... 28 907
gb|CH003511.1| Homo sapiens chromosome 16, whole genome sho... 28 907
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 28 907
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003458.1| Homo sapiens chromosome 11, whole genome sho... 28 907
gb|CH003463.1| Homo sapiens chromosome 16, whole genome sho... 28 907
ref|NW_926528.1| Homo sapiens chromosome 16 genomic contig,... 28 907
ref|NW_001838884.2| Homo sapiens chromosome 3 genomic conti... 28 907
ref|NW_001838952.2| Homo sapiens chromosome 5 genomic conti... 28 907
ref|NW_001838328.2| Homo sapiens chromosome 16 genomic cont... 28 907
ref|NW_001838329.1| Homo sapiens chromosome 16 genomic cont... 28 907
ref|NW_001838874.1| Homo sapiens chromosome 2 genomic conti... 28 907
ref|NW_921807.1| Homo sapiens chromosome 3 genomic contig, ... 28 907
ref|NW_921618.1| Homo sapiens chromosome 2 genomic contig, ... 28 907
ref|NW_925173.1| Homo sapiens chromosome 11 genomic contig,... 28 907
ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig,... 28 907
ref|NT_005416.13| Homo sapiens chromosome 2 genomic contig,... 28 907
ref|NT_010498.15| Homo sapiens chromosome 16 genomic contig... 28 907
ref|NT_167190.1| Homo sapiens chromosome 11 genomic contig,... 28 907
ref|NW_001838042.2| Homo sapiens chromosome 11 genomic cont... 28 907
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 907
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 28 907
ref|NC_000016.9| Homo sapiens chromosome 16, GRCh37.p2 prim... 28 907
ref|NC_000011.9| Homo sapiens chromosome 11, GRCh37.p2 prim... 28 907
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 28 907
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 28 907
ref|AC_000148.1| Homo sapiens chromosome 16, alternate asse... 28 907
ref|AC_000143.1| Homo sapiens chromosome 11, alternate asse... 28 907
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 28 907
ref|AC_000059.1| Homo sapiens chromosome 16, alternate asse... 28 907
ref|AC_000054.1| Homo sapiens chromosome 11, alternate asse... 28 907
1_0 1 aagttcaggcaactcttgtg 20
CM000492 234169984 .......a............ 234169965
CM000493 139447080 .......a............ 139447099
GL583057 4544718 .......a............ 4544699
GL583163 1336851 ................g... 1336832
GL583241 1738218 .......t............ 1738237
CM000501 90621894 .......t............ 90621875
CM000506 61687834 ................g... 61687815
CM000506 72091023 ............t....... 72091042
DS990653 51981379 .......a............ 51981360
DS990670 26064153 .......t............ 26064172
DS990726 9611365 ................g... 9611384
DS990888 791725 ............t....... 791744
DS990981 657458 .......a............ 657439
CH003497 247943053 .......a............ 247943072
CH003498 146808310 .......a............ 146808291
CH003506 94952591 .......t............ 94952572
CH003511 61815444 ................g... 61815463
CH003449 233285373 .......a............ 233285354
CH003450 139881771 .......a............ 139881790
CH003458 91401564 .......t............ 91401545
CH003463 56903924 ................g... 56903905
NW_926528 1467863 ................g... 1467844
NW_926528 11892751 ............t....... 11892770
NW_001838884 51982305 .......a............ 51982286
NW_001838952 28067109 .......a............ 28067128
NW_001838328 9611373 ................g... 9611392
NW_001838329 791797 ............t....... 791816
NW_001838874 657199 .......a............ 657180
NW_921807 48682600 .......a............ 48682619
NW_921618 46998197 .......a............ 46998178
NW_925173 4714385 .......t............ 4714366
NT_005612 48568640 .......a............ 48568659
NT_005416 1604999 .......a............ 1604980
NT_010498 29547780 ................g... 29547761
NT_010498 39963667 ............t....... 39963686
NT_167190 39863521 .......t............ 39863502
NW_001838042 26064264 .......t............ 26064283
NC_000003 142073494 .......a............ 142073513
NC_000002 242414131 .......a............ 242414112
NC_000016 75933581 ................g... 75933562
NC_000016 86349468 ............t....... 86349487
NC_000011 94557726 .......t............ 94557707
AC_000137 105909599 .......a............ 105909580
AC_000135 139446726 .......a............ 139446745
AC_000134 234169938 .......a............ 234169919
AC_000148 61687085 ................g... 61687066
AC_000148 72090354 ............t....... 72090373
AC_000143 90622745 .......t............ 90622726
AC_000046 140496930 .......a............ 140496949
AC_000045 236083667 .......a............ 236083648
AC_000059 60227949 ................g... 60227930
AC_000059 70652837 ............t....... 70652856
AC_000054 91845485 .......t............ 91845466
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 22,769,887
Number of extensions: 53
Number of successful extensions: 53
Number of sequences better than 1000.0: 47
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 53
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)