BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1147
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|GL583016.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|DS990669.1| Homo sapiens SCAF_1112675837377 genomic scaf... 28 907
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 907
ref|NW_001838579.2| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NW_921351.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NT_032977.9| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 907
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 907
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 907
1_0 2 agaggactcttggactctct 21
CM000491 67085415 .t.................. 67085396
GL583016 16647723 .t.................. 16647704
DS990669 14708744 .t.................. 14708763
CH003496 69223685 .t.................. 69223704
CH003448 68162316 .t.................. 68162297
NW_001838579 14709201 .t.................. 14709220
NW_921351 43126834 .t.................. 43126815
NT_032977 38947673 .t.................. 38947654
NC_000001 68975755 .t.................. 68975736
AC_000133 67085521 .t.................. 67085502
AC_000044 67265976 .t.................. 67265957
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 20,707,654
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)