BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1151
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582983.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL582988.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|CM000513.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|DS990672.1| Homo sapiens SCAF_1112675837227 genomic scaf... 28 907
gb|DS990673.1| Homo sapiens SCAF_1112675837361 genomic scaf... 28 907
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|CH003470.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 907
emb|CT009680.1| Human chromosome X complete sequence 28 907
ref|NW_927700.1| Homo sapiens chromosome X genomic contig, ... 28 907
ref|NW_001839132.1| Homo sapiens chromosome 8 genomic conti... 28 907
ref|NW_001842360.1| Homo sapiens chromosome X genomic conti... 28 907
ref|NW_923929.1| Homo sapiens chromosome 8 genomic contig, ... 28 907
ref|NT_167197.1| Homo sapiens chromosome X genomic contig, ... 28 907
ref|NT_008183.19| Homo sapiens chromosome 8 genomic contig,... 28 907
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 28 907
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 907
ref|AC_000155.1| Homo sapiens chromosome X, alternate assem... 28 907
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 28 907
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 907
1_0 1 aaattgcacctgtattcccat 21
GL582983 29805550 .g.................. 29805531
GL582988 14591924 ...a................ 14591905
CM000498 73119173 .g.................. 73119154
CM000513 16493467 ...a................ 16493448
DS990672 29518181 .g.................. 29518162
DS990673 10284433 ...a................ 10284414
CH003503 83206488 .g.................. 83206469
CH003518 11032346 ...a................ 11032365
CH003470 19506304 ...a................ 19506285
CH003455 73401960 .g.................. 73401941
CT009680 18294287 ...a................ 18294268
NW_927700 17257561 ...a................ 17257542
NW_001839132 29518384 .g.................. 29518365
NW_001842360 10284461 ...a................ 10284442
NW_923929 30759734 .g.................. 30759715
NT_167197 16620952 ...a................ 16620933
NT_008183 29497704 .g.................. 29497685
NC_000023 18739190 ...a................ 18739171
NC_000008 77633303 .g.................. 77633284
AC_000155 16493500 ...a................ 16493481
AC_000140 73119616 .g.................. 73119597
AC_000066 22859279 ...a................ 22859260
AC_000051 73626669 .g.................. 73626650
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 27,222,345
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 1000.0: 25
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 25
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)