BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1164
         (22 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583042.1|  Homo sapiens unplaced genomic scaffold scaff...    28     749
gb|CM000507.1|  Homo sapiens chromosome 17, whole genome sho...    28     749
gb|DS990712.1|  Homo sapiens SCAF_1112675837225 genomic scaf...    28     749
gb|CH003512.1|  Homo sapiens chromosome 17, whole genome sho...    28     749
gb|CH003464.1|  Homo sapiens chromosome 17, whole genome sho...    28     749
ref|NW_926894.1|  Homo sapiens chromosome 17 genomic contig,...    28     749
ref|NW_001838448.1|  Homo sapiens chromosome 17 genomic cont...    28     749
ref|NT_010783.15|  Homo sapiens chromosome 17 genomic contig...    28     749
ref|NC_000017.10|  Homo sapiens chromosome 17, GRCh37.p2 pri...    28     749
ref|AC_000149.1|  Homo sapiens chromosome 17, alternate asse...    28     749
ref|AC_000060.1|  Homo sapiens chromosome 17, alternate asse...    28     749

1_0          1        aggccttgtggtactgcctgat 22
GL583042     2194611  ..........t.........t. 2194632
CM000507     43247145 ..........t.........t. 43247166
DS990712     3114817  ..........t.........t. 3114838
CH003512     46919918 ..........t.........t. 46919939
CH003464     47045840 ..........t.........t. 47045861
NW_926894    2267858  ..........t.........t. 2267879
NW_001838448 3114834  ..........t.........t. 3114855
NT_010783    13155991 ..........t.........t. 13156012
NC_000017    47881839 ..........t.........t. 47881860
AC_000149    43246854 ..........t.........t. 43246875
AC_000060    44336836 ..........t.........t. 44336857

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 21,547,614
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 22
Length of database: 31,910,071,267
Length adjustment: 16
Effective length of query: 6
Effective length of database: 31,910,047,347
Effective search space: 191460284082
Effective search space used: 191460284082
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)