BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1186
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|GL583042.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583192.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000507.1| Homo sapiens chromosome 17, whole genome sho... 28 907
gb|DS990712.1| Homo sapiens SCAF_1112675837225 genomic scaf... 28 907
gb|DS990942.1| Homo sapiens SCAF_1112675837041 genomic scaf... 28 907
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003512.1| Homo sapiens chromosome 17, whole genome sho... 28 907
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003464.1| Homo sapiens chromosome 17, whole genome sho... 28 907
ref|NW_926894.1| Homo sapiens chromosome 17 genomic contig,... 28 907
ref|NW_001838448.1| Homo sapiens chromosome 17 genomic cont... 28 907
ref|NW_001838895.1| Homo sapiens chromosome 4 genomic conti... 28 907
ref|NW_921918.1| Homo sapiens chromosome 4 genomic contig, ... 28 907
ref|NT_037622.5| Homo sapiens chromosome 4 genomic contig, ... 28 907
ref|NT_010783.15| Homo sapiens chromosome 17 genomic contig... 28 907
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 28 907
ref|NC_000017.10| Homo sapiens chromosome 17, GRCh37.p2 pri... 28 907
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000149.1| Homo sapiens chromosome 17, alternate asse... 28 907
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000060.1| Homo sapiens chromosome 17, alternate asse... 28 907
1_0 2 aaggccttgtggtactgcct 21
CM000494 622893 ............a....... 622874
GL583042 2194610 ...........t........ 2194629
GL583192 586680 ............a....... 586661
CM000507 43247144 ...........t........ 43247163
DS990712 3114816 ...........t........ 3114835
DS990942 602575 ............a....... 602556
CH003499 611032 ............a....... 611013
CH003512 46919917 ...........t........ 46919936
CH003451 583747 ............a....... 583728
CH003464 47045839 ...........t........ 47045858
NW_926894 2267857 ...........t........ 2267876
NW_001838448 3114833 ...........t........ 3114852
NW_001838895 602557 ............a....... 602538
NW_921918 588113 ............a....... 588094
NT_037622 637711 ............a....... 637692
NT_010783 13155990 ...........t........ 13156009
NC_000004 647711 ............a....... 647692
NC_000017 47881838 ...........t........ 47881857
AC_000136 622876 ............a....... 622857
AC_000149 43246853 ...........t........ 43246872
AC_000047 588113 ............a....... 588094
AC_000060 44336835 ...........t........ 44336854
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 18,832,247
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 1000.0: 22
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)