BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1211
         (19 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000509.1|  Homo sapiens chromosome 19, whole genome sho...    29     422
gb|CH003514.1|  Homo sapiens chromosome 19, whole genome sho...    29     422
gb|CH003466.1|  Homo sapiens chromosome 19, whole genome sho...    29     422
ref|NW_927173.1|  Homo sapiens chromosome 19 genomic contig,...    29     422
ref|NT_011255.14|  Homo sapiens chromosome 19 genomic contig...    29     422
ref|NC_000019.9|  Homo sapiens chromosome 19, GRCh37.p2 prim...    29     422
ref|AC_000151.1|  Homo sapiens chromosome 19, alternate asse...    29     422
ref|AC_000062.1|  Homo sapiens chromosome 19, alternate asse...    29     422

1_0       1       tgactgcagagagtgctga 19
CM000509  6985895 ................... 6985913
CH003514  7959116 ................... 7959098
CH003466  7228360 ................... 7228378
NW_927173 6446846 ................... 6446864
NT_011255 7190787 ................... 7190805
NC_000019 7250787 ................... 7250805
AC_000151 6986036 ................... 6986054
AC_000062 7188122 ................... 7188140

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 25,680,010
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 1000.0: 8
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)