BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1268
         (19 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583035.1|  Homo sapiens unplaced genomic scaffold scaff...    29     422
gb|CM000495.1|  Homo sapiens chromosome 5, whole genome shot...    29     422
gb|DS990729.1|  Homo sapiens SCAF_1112675837054 genomic scaf...    29     422
gb|CH003500.1|  Homo sapiens chromosome 5, whole genome shot...    29     422
gb|CH003452.1|  Homo sapiens chromosome 5, whole genome shot...    29     422
ref|NW_001838927.1|  Homo sapiens chromosome 5 genomic conti...    29     422
ref|NW_922518.1|  Homo sapiens chromosome 5 genomic contig, ...    29     422
ref|NT_006576.16|  Homo sapiens chromosome 5 genomic contig,...    29     422
ref|NC_000005.9|  Homo sapiens chromosome 5, GRCh37.p2 prima...    29     422
ref|AC_000137.1|  Homo sapiens chromosome 5, alternate assem...    29     422
ref|AC_000048.1|  Homo sapiens chromosome 5, alternate assem...    29     422

1_0          1        ggatgaagaagcaatggaa 19
GL583035     8075131  ................... 8075149
CM000495     12246911 ................... 12246929
DS990729     4523327  ................... 4523345
CH003500     12999675 ................... 12999693
CH003452     12392923 ................... 12392941
NW_001838927 4523568  ................... 4523586
NW_922518    11403243 ................... 11403261
NT_006576    12255610 ................... 12255628
NC_000005    12265610 ................... 12265628
AC_000137    12247470 ................... 12247488
AC_000048    12300811 ................... 12300829

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 31,219,731
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)