BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1292
(22 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583209.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
ref|NW_922818.1| Homo sapiens chromosome 5 genomic contig, ... 28 749
ref|NT_023133.13| Homo sapiens chromosome 5 genomic contig,... 28 749
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 28 749
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 28 749
1_0 1 aaggacatgacctaccgtagac 22
GL583209 2494004 ...a...........a...... 2493983
NW_922818 713766 ...a...........a...... 713787
NT_023133 23000363 ...a...........a...... 23000384
NC_000005 178189090 ...a...........a...... 178189111
AC_000048 173816418 ...a...........a...... 173816439
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 13,996,694
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 1000.0: 5
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 22
Length of database: 31,910,071,267
Length adjustment: 16
Effective length of query: 6
Effective length of database: 31,910,047,347
Effective search space: 191460284082
Effective search space used: 191460284082
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)