BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1294
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582983.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|DS990672.1| Homo sapiens SCAF_1112675837227 genomic scaf... 28 907
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 907
ref|NW_001839132.1| Homo sapiens chromosome 8 genomic conti... 28 907
ref|NW_923929.1| Homo sapiens chromosome 8 genomic contig, ... 28 907
ref|NT_008183.19| Homo sapiens chromosome 8 genomic contig,... 28 907
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 907
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 907
1_0 1 aatttgtcaatctcaaagct 20
GL582983 9677019 .........t.......... 9677038
CM000498 52816059 .........t.......... 52816078
DS990672 9215067 .........t.......... 9215086
CH003503 61699063 .........t.......... 61699082
CH003455 53155170 .........t.......... 53155189
NW_001839132 9215023 .........t.......... 9215042
NW_923929 10473024 .........t.......... 10473043
NT_008183 9213564 .........t.......... 9213583
NC_000008 57349163 .........t.......... 57349182
AC_000140 52816255 .........t.......... 52816274
AC_000051 53339959 .........t.......... 53339978
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 33,711,142
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)