BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1295
(22 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582990.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|CM000505.1| Homo sapiens chromosome 15, whole genome sho... 28 749
gb|DS990671.1| Homo sapiens SCAF_1112675837203 genomic scaf... 28 749
gb|CH003510.1| Homo sapiens chromosome 15, whole genome sho... 28 749
gb|CH003462.1| Homo sapiens chromosome 15, whole genome sho... 28 749
ref|NW_925884.1| Homo sapiens chromosome 15 genomic contig,... 28 749
ref|NT_010194.17| Homo sapiens chromosome 15 genomic contig... 28 749
ref|NW_001838218.2| Homo sapiens chromosome 15 genomic cont... 28 749
ref|NC_000015.9| Homo sapiens chromosome 15, GRCh37.p2 prim... 28 749
ref|AC_000147.1| Homo sapiens chromosome 15, alternate asse... 28 749
ref|AC_000058.1| Homo sapiens chromosome 15, alternate asse... 28 749
gb|GL583283.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000495.1| Homo sapiens chromosome 5, whole genome shot... 28 907
gb|DS990813.1| Homo sapiens SCAF_1112675837314 genomic scaf... 28 907
gb|CH003500.1| Homo sapiens chromosome 5, whole genome shot... 28 907
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 28 907
ref|NT_006576.16| Homo sapiens chromosome 5 genomic contig,... 28 907
ref|NW_001838928.2| Homo sapiens chromosome 5 genomic conti... 28 907
ref|NW_922551.1| Homo sapiens chromosome 5 genomic contig, ... 28 907
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 28 907
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 28 907
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 28 907
1_0 1 aaggagttcctgatcttctggt 22
GL582990 9576792 ....t.......g......... 9576771
CM000505 31658456 ....t.......g......... 31658435
DS990671 19532570 ....t.......g......... 19532591
CH003510 33984367 ....t.......g......... 33984346
CH003462 31154659 ....t.......g......... 31154638
NW_925884 10819333 ....t.......g......... 10819312
NT_010194 25616956 ....t.......g......... 25616935
NW_001838218 19532735 ....t.......g......... 19532756
NC_000015 54826399 ....t.......g......... 54826378
AC_000147 31658275 ....t.......g......... 31658254
AC_000058 31721516 ....t.......g......... 31721495
GL583283 1339594 ...t................ 1339613
CM000495 17689981 ...t................ 17689962
DS990813 3670524 ...t................ 3670543
CH003500 32114139 ...t................ 32114120
CH003452 20656062 ...t................ 20656081
NT_006576 17781352 ...t................ 17781333
NW_001838928 3670506 ...t................ 3670525
NW_922551 195541 ...t................ 195522
NC_000005 17791352 ...t................ 17791333
AC_000137 17690326 ...t................ 17690307
AC_000048 18460665 ...t................ 18460646
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 31,621,787
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 1000.0: 22
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 22
Length of database: 31,910,071,267
Length adjustment: 16
Effective length of query: 6
Effective length of database: 31,910,047,347
Effective search space: 191460284082
Effective search space used: 191460284082
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)