BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1299
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000494.1|  Homo sapiens chromosome 4, whole genome shot...    28     907
gb|GL583103.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|DS990758.1|  Homo sapiens SCAF_1112675837376 genomic scaf...    28     907
gb|CH003499.1|  Homo sapiens chromosome 4, whole genome shot...    28     907
gb|CH003451.1|  Homo sapiens chromosome 4, whole genome shot...    28     907
ref|NW_922073.1|  Homo sapiens chromosome 4 genomic contig, ...    28     907
ref|NT_016297.16|  Homo sapiens chromosome 4 genomic contig,...    28     907
ref|NW_001838901.1|  Homo sapiens chromosome 4 genomic conti...    28     907
ref|NC_000004.11|  Homo sapiens chromosome 4, GRCh37.p2 prim...    28     907
ref|AC_000136.1|  Homo sapiens chromosome 4, alternate assem...    28     907
ref|AC_000047.1|  Homo sapiens chromosome 4, alternate assem...    28     907

1_0          1        aacgacaatattgctttgct 20
CM000494     32356615 ..a................. 32356634
GL583103     1186430  ..a................. 1186449
DS990758     1190989  ..a................. 1191008
CH003499     34122683 ..a................. 34122702
CH003451     32665451 ..a................. 32665470
NW_922073    23594250 ..a................. 23594269
NT_016297    187282   ..a................. 187301
NW_001838901 1190984  ..a................. 1191003
NC_000004    33027920 ..a................. 33027939
AC_000136    32356318 ..a................. 32356337
AC_000047    33467508 ..a................. 33467527

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,337,978
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)