BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1299
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|GL583103.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|DS990758.1| Homo sapiens SCAF_1112675837376 genomic scaf... 28 907
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 28 907
ref|NW_922073.1| Homo sapiens chromosome 4 genomic contig, ... 28 907
ref|NT_016297.16| Homo sapiens chromosome 4 genomic contig,... 28 907
ref|NW_001838901.1| Homo sapiens chromosome 4 genomic conti... 28 907
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 28 907
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 28 907
1_0 1 aacgacaatattgctttgct 20
CM000494 32356615 ..a................. 32356634
GL583103 1186430 ..a................. 1186449
DS990758 1190989 ..a................. 1191008
CH003499 34122683 ..a................. 34122702
CH003451 32665451 ..a................. 32665470
NW_922073 23594250 ..a................. 23594269
NT_016297 187282 ..a................. 187301
NW_001838901 1190984 ..a................. 1191003
NC_000004 33027920 ..a................. 33027939
AC_000136 32356318 ..a................. 32356337
AC_000047 33467508 ..a................. 33467527
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,337,978
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)