BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1337
         (20 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL582997.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CH003497.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
gb|CH003449.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
ref|NW_001838859.2|  Homo sapiens chromosome 2 genomic conti...    28     907
ref|NW_921585.1|  Homo sapiens chromosome 2 genomic contig, ...    28     907
ref|NT_022135.16|  Homo sapiens chromosome 2 genomic contig,...    28     907
ref|NC_000002.11|  Homo sapiens chromosome 2, GRCh37.p2 prim...    28     907
ref|AC_000134.1|  Homo sapiens chromosome 2, alternate assem...    28     907
ref|AC_000045.1|  Homo sapiens chromosome 2, alternate assem...    28     907

1_0          1         caagcctcttctcgctcctc 20
GL582997     491326    .c.................. 491345
CH003497     135133635 .c.................. 135133616
CH003449     124605071 .c.................. 124605090
NW_001838859 16236003  .c.................. 16235984
NW_921585    1364964   .c.................. 1364983
NT_022135    23208582  .c.................. 23208601
NC_000002    133459919 .c.................. 133459938
AC_000134    125453353 .c.................. 125453372
AC_000045    127175161 .c.................. 127175180

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 18,726,556
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 1000.0: 9
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 9
Length of query: 20
Length of database: 31,910,071,267
Length adjustment: 14
Effective length of query: 6
Effective length of database: 31,910,050,337
Effective search space: 191460302022
Effective search space used: 191460302022
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)