BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1370
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583088.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000502.1|  Homo sapiens chromosome 12, whole genome sho...    28     907
gb|DS990921.1|  Homo sapiens SCAF_1112675836748 genomic scaf...    28     907
gb|CH003507.1|  Homo sapiens chromosome 12, whole genome sho...    28     907
gb|CH003459.1|  Homo sapiens chromosome 12, whole genome sho...    28     907
ref|NW_925295.1|  Homo sapiens chromosome 12 genomic contig,...    28     907
ref|NT_009759.16|  Homo sapiens chromosome 12 genomic contig...    28     907
ref|NW_001838050.1|  Homo sapiens chromosome 12 genomic cont...    28     907
ref|NC_000012.11|  Homo sapiens chromosome 12, GRCh37.p2 pri...    28     907
ref|AC_000144.1|  Homo sapiens chromosome 12, alternate asse...    28     907
ref|AC_000055.1|  Homo sapiens chromosome 12, alternate asse...    28     907

1_0          2       tcactcaagcatttgggaga 21
GL583088     974641  ..c................. 974622
CM000502     6636549 ..c................. 6636568
DS990921     1191821 ..c................. 1191840
CH003507     6750465 ..c................. 6750484
CH003459     6856544 ..c................. 6856563
NW_925295    6603903 ..c................. 6603922
NT_009759    6723306 ..c................. 6723325
NW_001838050 1191814 ..c................. 1191833
NC_000012    6783306 ..c................. 6783325
AC_000144    6636588 ..c................. 6636607
AC_000055    8400321 ..c................. 8400340

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 36,439,932
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)