BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1370
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583088.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000502.1| Homo sapiens chromosome 12, whole genome sho... 28 907
gb|DS990921.1| Homo sapiens SCAF_1112675836748 genomic scaf... 28 907
gb|CH003507.1| Homo sapiens chromosome 12, whole genome sho... 28 907
gb|CH003459.1| Homo sapiens chromosome 12, whole genome sho... 28 907
ref|NW_925295.1| Homo sapiens chromosome 12 genomic contig,... 28 907
ref|NT_009759.16| Homo sapiens chromosome 12 genomic contig... 28 907
ref|NW_001838050.1| Homo sapiens chromosome 12 genomic cont... 28 907
ref|NC_000012.11| Homo sapiens chromosome 12, GRCh37.p2 pri... 28 907
ref|AC_000144.1| Homo sapiens chromosome 12, alternate asse... 28 907
ref|AC_000055.1| Homo sapiens chromosome 12, alternate asse... 28 907
1_0 2 tcactcaagcatttgggaga 21
GL583088 974641 ..c................. 974622
CM000502 6636549 ..c................. 6636568
DS990921 1191821 ..c................. 1191840
CH003507 6750465 ..c................. 6750484
CH003459 6856544 ..c................. 6856563
NW_925295 6603903 ..c................. 6603922
NT_009759 6723306 ..c................. 6723325
NW_001838050 1191814 ..c................. 1191833
NC_000012 6783306 ..c................. 6783325
AC_000144 6636588 ..c................. 6636607
AC_000055 8400321 ..c................. 8400340
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 36,439,932
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)