BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1376
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583092.1|  Homo sapiens unplaced genomic scaffold scaff...    29     422
gb|CM000504.1|  Homo sapiens chromosome 14, whole genome sho...    29     422
gb|DS990662.1|  Homo sapiens SCAF_1112675837338 genomic scaf...    29     422
gb|DS486024.1|  Homo sapiens SCAF_1103279188393 genomic scaf...    29     422
gb|CH003509.1|  Homo sapiens chromosome 14, whole genome sho...    29     422
gb|CH003461.1|  Homo sapiens chromosome 14, whole genome sho...    29     422
emb|AL954800.2|  Human chromosome 14 complete sequence             29     422
ref|NW_925539.1|  Homo sapiens chromosome 14 genomic contig,...    29     422
ref|NT_026437.12|  Homo sapiens chromosome 14 genomic contig...    29     422
ref|NW_001838110.1|  Homo sapiens chromosome 14 genomic cont...    29     422
ref|NC_000014.8|  Homo sapiens chromosome 14, GRCh37.p2 prim...    29     422
ref|AC_000146.1|  Homo sapiens chromosome 14, alternate asse...    29     422
ref|AC_000057.1|  Homo sapiens chromosome 14, alternate asse...    29     422
1_0          3        tacacccaaagaccacatt 21
GL583092     187474   ................... 187456
CM000504     8159508  ................... 8159526
DS990662     7848316  ................... 7848334
DS486024     7848482  ................... 7848500
CH003509     7684616  ................... 7684634
CH003461     7841182  ................... 7841200
AL954800     7963391  ................... 7963409
NW_925539    7850954  ................... 7850972
NT_026437    9043263  ................... 9043281
NW_001838110 7848482  ................... 7848500
NC_000014    28043263 ................... 28043281
AC_000146    8159658  ................... 8159676
AC_000057    7908832  ................... 7908850
  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,099,905
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 1000.0: 13
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 13
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)