BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1377
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 30 162
gb|GL582996.1| Homo sapiens unplaced genomic scaffold scaff... 30 162
gb|DS990654.1| Homo sapiens SCAF_1112675837378 genomic scaf... 30 162
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 30 162
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 30 162
ref|NW_927719.1| Homo sapiens chromosome 2 genomic contig, ... 30 162
ref|NW_001838769.1| Homo sapiens chromosome 2 genomic conti... 30 162
ref|NT_022184.15| Homo sapiens chromosome 2 genomic contig,... 30 162
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 30 162
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 30 162
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 30 162
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|GL583003.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583130.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000504.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|DS990655.1| Homo sapiens SCAF_1112675837088 genomic scaf... 28 907
gb|DS990735.1| Homo sapiens SCAF_1112675837272 genomic scaf... 28 907
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003509.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003461.1| Homo sapiens chromosome 14, whole genome sho... 28 907
emb|AL954800.2| Human chromosome 14 complete sequence 28 907
ref|NW_001838877.2| Homo sapiens chromosome 3 genomic conti... 28 907
ref|NW_921651.1| Homo sapiens chromosome 3 genomic contig, ... 28 907
ref|NW_925561.1| Homo sapiens chromosome 14 genomic contig,... 28 907
ref|NT_022517.18| Homo sapiens chromosome 3 genomic contig,... 28 907
ref|NT_026437.12| Homo sapiens chromosome 14 genomic contig... 28 907
ref|NW_001838115.2| Homo sapiens chromosome 14 genomic cont... 28 907
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 907
ref|NC_000014.8| Homo sapiens chromosome 14, GRCh37.p2 prim... 28 907
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000146.1| Homo sapiens chromosome 14, alternate asse... 28 907
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000057.1| Homo sapiens chromosome 14, alternate asse... 28 907
1_0 1 aatcctaataacaatgctgc 20
CM000492 59701024 .................... 59701043
GL582996 23627596 .................... 23627577
DS990654 29797380 .................... 29797399
CH003497 62332801 .................... 62332820
CH003449 59593713 .................... 59593732
NW_927719 59735074 .................... 59735093
NW_001838769 29797523 .................... 29797542
NT_022184 38781346 .................... 38781365
NC_000002 59959459 .................... 59959478
AC_000134 59701279 .................... 59701298
AC_000045 59803139 .................... 59803158
CM000493 23751810 ......t............. 23751791
GL583003 1203070 .......t............ 1203089
GL583130 2401075 ......t............. 2401056
CM000504 80705585 .......t............ 80705566
DS990655 42515820 ......t............. 42515839
DS990735 4175505 .......t............ 4175524
CH003498 29257677 ......t............. 29257658
CH003509 82300570 .......t............ 82300551
CH003450 23730541 ......t............. 23730522
CH003461 80285783 .......t............ 80285764
AL954800 80444236 .......t............ 80444217
NW_001838877 42515716 ......t............. 42515735
NW_921651 23742458 ......t............. 23742439
NW_925561 47333576 .......t............ 47333557
NT_022517 23746334 ......t............. 23746315
NT_026437 81524195 .......t............ 81524176
NW_001838115 4175532 .......t............ 4175551
NC_000003 23806334 ......t............. 23806315
NC_000014 100524195 .......t............ 100524176
AC_000135 23751946 ......t............. 23751927
AC_000146 80706387 .......t............ 80706368
AC_000046 23742458 ......t............. 23742439
AC_000057 80579046 .......t............ 80579027
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,223,673
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 1000.0: 34
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 34
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)