BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1378
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|GL582988.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583017.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000513.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|DS990657.1| Homo sapiens SCAF_1112675837360 genomic scaf... 28 907
gb|DS990673.1| Homo sapiens SCAF_1112675837361 genomic scaf... 28 907
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|CH003470.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 28 907
emb|CT009680.1| Human chromosome X complete sequence 28 907
ref|NW_927700.1| Homo sapiens chromosome X genomic contig, ... 28 907
ref|NW_001838921.1| Homo sapiens chromosome 4 genomic conti... 28 907
ref|NW_001842360.1| Homo sapiens chromosome X genomic conti... 28 907
ref|NW_922217.1| Homo sapiens chromosome 4 genomic contig, ... 28 907
ref|NT_167197.1| Homo sapiens chromosome X genomic contig, ... 28 907
ref|NT_016354.19| Homo sapiens chromosome 4 genomic contig,... 28 907
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 28 907
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 28 907
ref|AC_000155.1| Homo sapiens chromosome X, alternate assem... 28 907
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 28 907
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 28 907
1_0 1 aacaaagaaggcatcgtatgg 21
CM000494 179161801 ..............t..... 179161782
GL582988 7254692 ...............c.... 7254673
GL583017 11987289 ..............t..... 11987270
CM000513 9064009 ...............c.... 9063990
DS990657 43643130 ..............t..... 43643111
DS990673 2854975 ...............c.... 2854956
CH003499 183617979 ..............t..... 183617960
CH003518 3846032 ...............c.... 3846051
CH003470 12042936 ...............c.... 12042917
CH003451 180250303 ..............t..... 180250284
CT009680 10839568 ...............c.... 10839549
NW_927700 9810209 ...............c.... 9810190
NW_001838921 43642805 ..............t..... 43642786
NW_001842360 2855023 ...............c.... 2855004
NW_922217 62993097 ..............t..... 62993078
NT_167197 9166233 ...............c.... 9166214
NT_016354 107951689 ..............t..... 107951670
NC_000023 11284471 ...............c.... 11284452
NC_000004 183403968 ..............t..... 183403949
AC_000155 9064062 ...............c.... 9064043
AC_000136 179160566 ..............t..... 179160547
AC_000066 15411927 ...............c.... 15411908
AC_000047 180735618 ..............t..... 180735599
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 25,633,561
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 1000.0: 23
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 23
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)