BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1379
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000495.1|  Homo sapiens chromosome 5, whole genome shot...    28     907
gb|DS990743.1|  Homo sapiens SCAF_1112675837270 genomic scaf...    28     907
gb|CH003500.1|  Homo sapiens chromosome 5, whole genome shot...    28     907
gb|CH003452.1|  Homo sapiens chromosome 5, whole genome shot...    28     907
ref|NW_001838935.2|  Homo sapiens chromosome 5 genomic conti...    28     907
ref|NW_922618.1|  Homo sapiens chromosome 5 genomic contig, ...    28     907
ref|NT_006713.15|  Homo sapiens chromosome 5 genomic contig,...    28     907
ref|NC_000005.9|  Homo sapiens chromosome 5, GRCh37.p2 prima...    28     907
ref|AC_000137.1|  Homo sapiens chromosome 5, alternate assem...    28     907
ref|AC_000048.1|  Homo sapiens chromosome 5, alternate assem...    28     907

1_0          2        aggaggaacttagattccct 21
CM000495     58379263 ...........t........ 58379282
DS990743     7421345  ...........t........ 7421326
CH003500     60542703 ...........t........ 60542722
CH003452     58370156 ...........t........ 58370175
NW_001838935 7421396  ...........t........ 7421377
NW_922618    843991   ...........t........ 844010
NT_006713    12017285 ...........t........ 12017304
NC_000005    61422926 ...........t........ 61422945
AC_000137    58379081 ...........t........ 58379100
AC_000048    58418843 ...........t........ 58418862

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 25,121,851
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 1000.0: 10
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)