BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1382
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583102.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000499.1|  Homo sapiens chromosome 9, whole genome shot...    28     907
gb|DS990665.1|  Homo sapiens SCAF_1112675837347 genomic scaf...    28     907
gb|CH003504.1|  Homo sapiens chromosome 9, whole genome shot...    28     907
gb|CH003456.1|  Homo sapiens chromosome 9, whole genome shot...    28     907
ref|NW_001839149.2|  Homo sapiens chromosome 9 genomic conti...    28     907
ref|NW_924062.1|  Homo sapiens chromosome 9 genomic contig, ...    28     907
ref|NT_008413.18|  Homo sapiens chromosome 9 genomic contig,...    28     907
ref|NC_000009.11|  Homo sapiens chromosome 9, GRCh37.p2 prim...    28     907
ref|AC_000141.1|  Homo sapiens chromosome 9, alternate assem...    28     907
ref|AC_000052.1|  Homo sapiens chromosome 9, alternate assem...    28     907

1_0          1        aataatactgcgtcttggtt 20
GL583102     2934328  .....c.............. 2934309
CM000499     9614702  .....c.............. 9614683
DS990665     26253267 .....c.............. 26253286
CH003504     9796697  .....c.............. 9796678
CH003456     9690910  .....c.............. 9690891
NW_001839149 26253667 .....c.............. 26253686
NW_924062    9468092  .....c.............. 9468073
NT_008413    9639112  .....c.............. 9639093
NC_000009    9649112  .....c.............. 9649093
AC_000141    9614554  .....c.............. 9614535
AC_000052    9583573  .....c.............. 9583554

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 19,867,514
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)