BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1383
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583096.1| Homo sapiens unplaced genomic scaffold scaff... 30 162
gb|CM000499.1| Homo sapiens chromosome 9, whole genome shot... 30 162
gb|DS990696.1| Homo sapiens SCAF_1112675837234 genomic scaf... 30 162
gb|CH003504.1| Homo sapiens chromosome 9, whole genome shot... 30 162
gb|CH003456.1| Homo sapiens chromosome 9, whole genome shot... 30 162
ref|NW_001839236.2| Homo sapiens chromosome 9 genomic conti... 30 162
ref|NW_924539.1| Homo sapiens chromosome 9 genomic contig, ... 30 162
ref|NT_008470.19| Homo sapiens chromosome 9 genomic contig,... 30 162
ref|NC_000009.11| Homo sapiens chromosome 9, GRCh37.p2 prim... 30 162
ref|AC_000141.1| Homo sapiens chromosome 9, alternate assem... 30 162
ref|AC_000052.1| Homo sapiens chromosome 9, alternate assem... 30 162
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 29 348
gb|GL582991.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|GL583216.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|DS990653.1| Homo sapiens SCAF_1112675837330 genomic scaf... 29 348
gb|DS990662.1| Homo sapiens SCAF_1112675837338 genomic scaf... 29 348
gb|DS486024.1| Homo sapiens SCAF_1103279188393 genomic scaf... 29 348
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 29 348
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 29 348
ref|NW_001838881.2| Homo sapiens chromosome 3 genomic conti... 29 348
ref|NW_001838884.2| Homo sapiens chromosome 3 genomic conti... 29 348
ref|NW_921807.1| Homo sapiens chromosome 3 genomic contig, ... 29 348
ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig,... 29 348
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 29 348
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 29 348
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 29 348
gb|GL582982.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL582993.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583041.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583154.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000495.1| Homo sapiens chromosome 5, whole genome shot... 28 907
gb|CM000496.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CM000500.1| Homo sapiens chromosome 10, whole genome sho... 28 907
gb|DS990686.1| Homo sapiens SCAF_1112675837340 genomic scaf... 28 907
gb|DS990690.1| Homo sapiens SCAF_1112675837071 genomic scaf... 28 907
gb|DS990700.1| Homo sapiens SCAF_1112675837045 genomic scaf... 28 907
gb|DS990738.1| Homo sapiens SCAF_1112675837241 genomic scaf... 28 907
gb|CH003500.1| Homo sapiens chromosome 5, whole genome shot... 28 907
gb|CH003505.1| Homo sapiens chromosome 10, whole genome sho... 28 907
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 28 907
gb|CH003453.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CH003457.1| Homo sapiens chromosome 10, whole genome sho... 28 907
ref|NW_001838921.1| Homo sapiens chromosome 4 genomic conti... 28 907
ref|NW_001838951.1| Homo sapiens chromosome 5 genomic conti... 28 907
ref|NW_001838973.1| Homo sapiens chromosome 6 genomic conti... 28 907
ref|NW_001839239.1| Homo sapiens chromosome 9 genomic conti... 28 907
ref|NW_924796.1| Homo sapiens chromosome 10 genomic contig,... 28 907
ref|NW_922729.1| Homo sapiens chromosome 5 genomic contig, ... 28 907
ref|NW_922984.1| Homo sapiens chromosome 6 genomic contig, ... 28 907
ref|NW_924573.1| Homo sapiens chromosome 9 genomic contig, ... 28 907
ref|NT_007592.15| Homo sapiens chromosome 6 genomic contig,... 28 907
ref|NT_006713.15| Homo sapiens chromosome 5 genomic contig,... 28 907
ref|NT_030059.13| Homo sapiens chromosome 10 genomic contig... 28 907
ref|NW_001837986.1| Homo sapiens chromosome 10 genomic cont... 28 907
ref|NC_000006.11| Homo sapiens chromosome 6, GRCh37.p2 prim... 28 907
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 28 907
ref|NC_000010.10| Homo sapiens chromosome 10, GRCh37.p2 pri... 28 907
ref|AC_000138.1| Homo sapiens chromosome 6, alternate assem... 28 907
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 28 907
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000142.1| Homo sapiens chromosome 10, alternate asse... 28 907
ref|AC_000049.1| Homo sapiens chromosome 6, alternate assem... 28 907
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 28 907
ref|AC_000053.1| Homo sapiens chromosome 10, alternate asse... 28 907
1_0 1 aaactataaattaaatacaga 21
GL583096 6728066 .................... 6728085
CM000499 78654410 .................... 78654391
CM000499 95207908 .............c...... 95207889
DS990696 10724752 .................... 10724771
CH003504 83986160 .................... 83986141
CH003456 77048929 .................... 77048910
CH003456 93649033 .............c...... 93649014
NW_001839236 10724634 .................... 10724653
NW_924539 9269159 .................... 9269140
NT_008470 38218390 .................... 38218371
NT_008470 54758261 .............c...... 54758242
NC_000009 109053858 .................... 109053839
NC_000009 125593729 .............c...... 125593710
AC_000141 78655107 .................... 78655088
AC_000141 95208316 .............c...... 95208297
AC_000052 79559455 .................... 79559436
AC_000052 96242072 .............c...... 96242053
CM000493 115387652 ...t................. 115387632
CM000493 149779123 .c................... 149779103
GL582991 7402644 ...t................. 7402664
GL583216 2968448 .c................... 2968428
DS990653 41649336 .c................... 41649356
DS990662 23271342 ...t................. 23271362
DS486024 23271325 ...t................. 23271345
CH003498 121710649 ...t................. 121710629
CH003498 158148885 .c................... 158148865
CH003450 115664294 ...t................. 115664274
CH003450 150163377 .c................... 150163357
NW_001838881 2282855 ...t................. 2282875
NW_001838884 41650154 .c................... 41650174
NW_921807 24605223 ...t................. 24605203
NW_921807 58993256 .c................... 58993236
NT_005612 24506680 ...t................. 24506660
NT_005612 58884519 .c................... 58884499
NC_000003 118011534 ...t................. 118011514
NC_000003 152389373 .c................... 152389353
AC_000135 115387219 ...t................. 115387199
AC_000135 149778877 .c................... 149778857
AC_000046 116419553 ...t................. 116419533
AC_000046 150807586 .c................... 150807566
GL582982 24593897 .............c...... 24593878
GL582993 22601756 .................a.. 22601775
GL583041 10378775 ...............g.... 10378794
GL583154 731014 ..........a......... 730995
CM000495 84733508 ..........a......... 84733527
CM000496 23008673 .................a.. 23008692
CM000500 62393630 ...............g.... 62393649
DS990686 18815276 ..........a......... 18815295
DS990690 19353483 .................a.. 19353502
DS990700 13818373 ...............g.... 13818392
DS990738 935640 .............c...... 935621
CH003500 89601204 ..........a......... 89601223
CH003505 64723964 ...............g.... 64723983
CH003452 84917368 ..........a......... 84917387
CH003453 22944255 .................a.. 22944274
CH003457 61692637 ...............g.... 61692656
NW_001838921 16174564 ...........a........ 16174545
NW_001838951 18815117 ..........a......... 18815136
NW_001838973 19353346 .................a.. 19353365
NW_001839239 935624 .............c...... 935605
NW_924796 15864543 ...............g.... 15864562
NW_922729 18824572 ..........a......... 18824591
NW_922984 22694719 .................a.. 22694738
NW_924573 9729903 .............c...... 9729884
NT_007592 23005799 .................a.. 23005818
NT_006713 40117235 ..........a......... 40117254
NT_030059 19199477 ...............g.... 19199496
NW_001837986 13818905 ...............g.... 13818924
NC_000006 23065799 .................a.. 23065818
NC_000005 89522876 ..........a......... 89522895
NC_000010 68395013 ...............g.... 68395032
AC_000138 23008309 .................a.. 23008328
AC_000137 84733226 ..........a......... 84733245
AC_000136 151692325 ...........a........ 151692306
AC_000142 62393778 ...............g.... 62393797
AC_000049 24299463 .................a.. 24299482
AC_000048 85424728 ..........a......... 85424747
AC_000053 61670300 ...............g.... 61670319
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 58,445,938
Number of extensions: 78
Number of successful extensions: 78
Number of sequences better than 1000.0: 64
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 78
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)