BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1392
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583186.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583219.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000505.1| Homo sapiens chromosome 15, whole genome sho... 28 907
gb|CM000513.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|DS990823.1| Homo sapiens SCAF_1112675837313 genomic scaf... 28 907
gb|DS990937.1| Homo sapiens SCAF_1112675837244 genomic scaf... 28 907
gb|CH003510.1| Homo sapiens chromosome 15, whole genome sho... 28 907
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|CH003470.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|CH003462.1| Homo sapiens chromosome 15, whole genome sho... 28 907
emb|CT009680.1| Human chromosome X complete sequence 28 907
ref|NW_927727.1| Homo sapiens chromosome X genomic contig, ... 28 907
ref|NW_001842411.2| Homo sapiens chromosome X genomic conti... 28 907
ref|NW_925783.1| Homo sapiens chromosome 15 genomic contig,... 28 907
ref|NT_011681.16| Homo sapiens chromosome X genomic contig,... 28 907
ref|NT_026446.14| Homo sapiens chromosome 15 genomic contig... 28 907
ref|NW_001838195.2| Homo sapiens chromosome 15 genomic cont... 28 907
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 28 907
ref|NC_000015.9| Homo sapiens chromosome 15, GRCh37.p2 prim... 28 907
ref|AC_000155.1| Homo sapiens chromosome X, alternate assem... 28 907
ref|AC_000147.1| Homo sapiens chromosome 15, alternate asse... 28 907
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 28 907
ref|AC_000058.1| Homo sapiens chromosome 15, alternate asse... 28 907
1_0 1 agcttaaacaactcctggaa 20
GL583186 3414883 .......t............ 3414902
GL583219 1809854 ...........a........ 1809873
CM000505 5551750 ...........a........ 5551769
CM000513 135941300 .......t............ 135941319
DS990823 273394 .......t............ 273375
DS990937 1142779 ...........a........ 1142760
CH003510 5564749 ...........a........ 5564730
CH003518 114559559 .......t............ 114559578
CH003470 141973018 .......t............ 141973037
CH003462 4403521 ...........a........ 4403540
CT009680 145961862 .......t............ 145961881
NW_927727 1080518 .......t............ 1080537
NW_001842411 273393 .......t............ 273374
NW_925783 3804083 ...........a........ 3804102
NT_011681 3423153 .......t............ 3423172
NT_026446 3858669 ...........a........ 3858688
NW_001838195 1142811 ...........a........ 1142792
NC_000023 146980477 .......t............ 146980496
NC_000015 27423522 ...........a........ 27423541
AC_000155 135941163 .......t............ 135941182
AC_000147 5551636 ...........a........ 5551655
AC_000066 147332455 .......t............ 147332474
AC_000058 5583122 ...........a........ 5583141
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 34,151,365
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 1000.0: 23
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 23
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)