BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1408
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000496.1|  Homo sapiens chromosome 6, whole genome shot...    29     348
gb|CH003453.1|  Homo sapiens chromosome 6, whole genome shot...    29     348
ref|NT_007592.15|  Homo sapiens chromosome 6 genomic contig,...    29     348
ref|NC_000006.11|  Homo sapiens chromosome 6, GRCh37.p2 prim...    29     348
ref|AC_000138.1|  Homo sapiens chromosome 6, alternate assem...    29     348
ref|AC_000049.1|  Homo sapiens chromosome 6, alternate assem...    29     348

1_0       1        aatatcgtcggagctgtacac 21
CM000496  57575674 ...........g......... 57575694
CH003453  57999375 ...........g......... 57999395
NT_007592 58512480 ...........g......... 58512500
NC_000006 58572480 ...........g......... 58572500
AC_000138 57575499 ...........g......... 57575519
AC_000049 59208119 ...........g......... 59208139

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 9,775,162
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 1000.0: 6
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)