BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1408
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000496.1| Homo sapiens chromosome 6, whole genome shot... 29 348
gb|CH003453.1| Homo sapiens chromosome 6, whole genome shot... 29 348
ref|NT_007592.15| Homo sapiens chromosome 6 genomic contig,... 29 348
ref|NC_000006.11| Homo sapiens chromosome 6, GRCh37.p2 prim... 29 348
ref|AC_000138.1| Homo sapiens chromosome 6, alternate assem... 29 348
ref|AC_000049.1| Homo sapiens chromosome 6, alternate assem... 29 348
1_0 1 aatatcgtcggagctgtacac 21
CM000496 57575674 ...........g......... 57575694
CH003453 57999375 ...........g......... 57999395
NT_007592 58512480 ...........g......... 58512500
NC_000006 58572480 ...........g......... 58572500
AC_000138 57575499 ...........g......... 57575519
AC_000049 59208119 ...........g......... 59208139
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 9,775,162
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 1000.0: 6
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)