BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1411
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 29 348
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|GL583020.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583306.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|DS990682.1| Homo sapiens SCAF_1112675837157 genomic scaf... 28 907
gb|DS990706.1| Homo sapiens SCAF_1112675837268 genomic scaf... 28 907
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 28 907
ref|NW_926794.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NW_001838900.1| Homo sapiens chromosome 4 genomic conti... 28 907
ref|NW_001838537.2| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NW_922073.1| Homo sapiens chromosome 4 genomic contig, ... 28 907
ref|NT_006316.16| Homo sapiens chromosome 4 genomic contig,... 28 907
ref|NT_167186.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 907
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 28 907
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 907
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 907
1_0 1 aagacttatgatcctctctca 21
CH003496 197850930 .......c............. 197850950
CM000491 193415760 .......c............ 193415779
CM000494 22595392 ....g............... 22595373
GL583020 8556941 ....g............... 8556960
GL583306 1265849 .......c............ 1265830
DS990682 13874463 ....g............... 13874444
DS990706 511929 .......c............ 511910
CH003499 22994581 ....g............... 22994562
CH003448 195456166 .......c............ 195456185
CH003451 22922284 ....g............... 22922265
NW_926794 16127477 .......c............ 16127496
NW_001838900 13874706 ....g............... 13874687
NW_001838537 511942 .......c............ 511923
NW_922073 13827218 ....g............... 13827199
NT_006316 14432403 ....g............... 14432384
NT_167186 16260406 .......c............ 16260425
NC_000001 222742627 .......c............ 222742646
NC_000004 23250606 ....g............... 23250587
AC_000136 22595373 ....g............... 22595354
AC_000133 193416742 .......c............ 193416761
AC_000047 23700476 ....g............... 23700457
AC_000044 195961717 .......c............ 195961736
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,125,728
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 1000.0: 22
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)