BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1411
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CH003496.1|  Homo sapiens chromosome 1, whole genome shot...    29     348
gb|CM000491.1|  Homo sapiens chromosome 1, whole genome shot...    28     907
gb|CM000494.1|  Homo sapiens chromosome 4, whole genome shot...    28     907
gb|GL583020.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583306.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|DS990682.1|  Homo sapiens SCAF_1112675837157 genomic scaf...    28     907
gb|DS990706.1|  Homo sapiens SCAF_1112675837268 genomic scaf...    28     907
gb|CH003499.1|  Homo sapiens chromosome 4, whole genome shot...    28     907
gb|CH003448.1|  Homo sapiens chromosome 1, whole genome shot...    28     907
gb|CH003451.1|  Homo sapiens chromosome 4, whole genome shot...    28     907
ref|NW_926794.1|  Homo sapiens chromosome 1 genomic contig, ...    28     907
ref|NW_001838900.1|  Homo sapiens chromosome 4 genomic conti...    28     907
ref|NW_001838537.2|  Homo sapiens chromosome 1 genomic conti...    28     907
ref|NW_922073.1|  Homo sapiens chromosome 4 genomic contig, ...    28     907
ref|NT_006316.16|  Homo sapiens chromosome 4 genomic contig,...    28     907
ref|NT_167186.1|  Homo sapiens chromosome 1 genomic contig, ...    28     907
ref|NC_000001.10|  Homo sapiens chromosome 1, GRCh37.p2 prim...    28     907
ref|NC_000004.11|  Homo sapiens chromosome 4, GRCh37.p2 prim...    28     907
ref|AC_000136.1|  Homo sapiens chromosome 4, alternate assem...    28     907
ref|AC_000133.1|  Homo sapiens chromosome 1, alternate assem...    28     907
ref|AC_000047.1|  Homo sapiens chromosome 4, alternate assem...    28     907
ref|AC_000044.1|  Homo sapiens chromosome 1, alternate assem...    28     907
1_0          1         aagacttatgatcctctctca 21
CH003496     197850930 .......c............. 197850950
CM000491     193415760 .......c............  193415779
CM000494     22595392  ....g...............  22595373
GL583020     8556941   ....g...............  8556960
GL583306     1265849   .......c............  1265830
DS990682     13874463  ....g...............  13874444
DS990706     511929    .......c............  511910
CH003499     22994581  ....g...............  22994562
CH003448     195456166 .......c............  195456185
CH003451     22922284  ....g...............  22922265
NW_926794    16127477  .......c............  16127496
NW_001838900 13874706  ....g...............  13874687
NW_001838537 511942    .......c............  511923
NW_922073    13827218  ....g...............  13827199
NT_006316    14432403  ....g...............  14432384
NT_167186    16260406  .......c............  16260425
NC_000001    222742627 .......c............  222742646
NC_000004    23250606  ....g...............  23250587
AC_000136    22595373  ....g...............  22595354
AC_000133    193416742 .......c............  193416761
AC_000047    23700476  ....g...............  23700457
AC_000044    195961717 .......c............  195961736
  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,125,728
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 1000.0: 22
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)