BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1416
         (22 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000492.1|  Homo sapiens chromosome 2, whole genome shot...    29     348
gb|GL583045.1|  Homo sapiens unplaced genomic scaffold scaff...    29     348
gb|DS990760.1|  Homo sapiens SCAF_1112675837258 genomic scaf...    29     348
gb|CH003497.1|  Homo sapiens chromosome 2, whole genome shot...    29     348
gb|CH003449.1|  Homo sapiens chromosome 2, whole genome shot...    29     348
ref|NW_001838847.2|  Homo sapiens chromosome 2 genomic conti...    29     348
ref|NW_921507.1|  Homo sapiens chromosome 2 genomic contig, ...    29     348
ref|NT_022135.16|  Homo sapiens chromosome 2 genomic contig,...    29     348
ref|NC_000002.11|  Homo sapiens chromosome 2, GRCh37.p2 prim...    29     348
ref|AC_000134.1|  Homo sapiens chromosome 2, alternate assem...    29     348
ref|AC_000045.1|  Homo sapiens chromosome 2, alternate assem...    29     348
gb|GL583293.1|  Homo sapiens unplaced genomic scaffold scaff...    28     749
gb|CM000513.1|  Homo sapiens chromosome X, whole genome shot...    28     749
gb|DS990943.1|  Homo sapiens SCAF_1112675837308 genomic scaf...    28     749
gb|CH003518.1|  Homo sapiens chromosome X, whole genome shot...    28     749
gb|CH003470.1|  Homo sapiens chromosome X, whole genome shot...    28     749
emb|CT009680.1|  Human chromosome X complete sequence              28     749
ref|NW_927717.1|  Homo sapiens chromosome X genomic contig, ...    28     749
ref|NW_001842393.1|  Homo sapiens chromosome X genomic conti...    28     749
ref|NT_028405.12|  Homo sapiens chromosome X genomic contig,...    28     749
ref|NC_000023.10|  Homo sapiens chromosome X, GRCh37.p2 prim...    28     749
ref|AC_000155.1|  Homo sapiens chromosome X, alternate assem...    28     749
ref|AC_000066.1|  Homo sapiens chromosome X, alternate assem...    28     749
gb|GL583044.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583199.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000497.1|  Homo sapiens chromosome 7, whole genome shot...    28     907
gb|CM000501.1|  Homo sapiens chromosome 11, whole genome sho...    28     907
gb|DS990663.1|  Homo sapiens SCAF_1112675837337 genomic scaf...    28     907
gb|DS990666.1|  Homo sapiens SCAF_1112675837326 genomic scaf...    28     907
gb|CH003502.1|  Homo sapiens chromosome 7, whole genome shot...    28     907
gb|DS990803.1|  Homo sapiens SCAF_1112675837112 genomic scaf...    28     907
gb|DS486028.1|  Homo sapiens SCAF_1103279188381 genomic scaf...    28     907
gb|CH003506.1|  Homo sapiens chromosome 11, whole genome sho...    28     907
gb|CH003454.1|  Homo sapiens chromosome 7, whole genome shot...    28     907
gb|CH003458.1|  Homo sapiens chromosome 11, whole genome sho...    28     907
tpg|BL000002.1|  TPA: Homo sapiens chromosome 7                    28     907
ref|NW_001839071.2|  Homo sapiens chromosome 7 genomic conti...    28     907
ref|NW_925006.1|  Homo sapiens chromosome 11 genomic contig,...    28     907
ref|NW_923640.1|  Homo sapiens chromosome 7 genomic contig, ...    28     907
ref|NT_007933.15|  Homo sapiens chromosome 7 genomic contig,...    28     907
ref|NT_009237.18|  Homo sapiens chromosome 11 genomic contig...    28     907
ref|NW_001838022.2|  Homo sapiens chromosome 11 genomic cont...    28     907
ref|NW_001838021.1|  Homo sapiens chromosome 11 genomic cont...    28     907
ref|NT_079596.2|  Homo sapiens chromosome 7 genomic contig, ...    28     907
ref|NC_000007.13|  Homo sapiens chromosome 7, GRCh37.p2 prim...    28     907
ref|NC_000011.9|  Homo sapiens chromosome 11, GRCh37.p2 prim...    28     907
ref|AC_000139.1|  Homo sapiens chromosome 7, alternate assem...    28     907
ref|AC_000143.1|  Homo sapiens chromosome 11, alternate asse...    28     907
ref|AC_000068.1|  Homo sapiens chromosome 7, alternate assem...    28     907
ref|AC_000050.1|  Homo sapiens chromosome 7, alternate assem...    28     907
ref|AC_000054.1|  Homo sapiens chromosome 11, alternate asse...    28     907
1_0          1         aaatttggagagtggcaggtgg 22
CM000492     111806957 .g...................  111806977
GL583045     7114153   .g...................  7114133
DS990760     1665980   .g...................  1665960
CH003497     118583035 .g...................  118583055
CH003449     111043133 .g...................  111043153
NW_001838847 1666003   .g...................  1665983
NW_921507    5079387   .g...................  5079407
NT_022135    9230073   .g...................  9230093
NC_000002    119481410 .g...................  119481430
AC_000134    111806830 .g...................  111806850
AC_000045    112806015 .g...................  112806035
GL583293     1000907   ....g...............a. 1000886
CM000513     103551716 ....g...............a. 103551737
DS990943     400816    ....g...............a. 400837
CH003518     87975566  ....g...............a. 87975587
CH003470     109384343 ....g...............a. 109384364
CT009680     113121914 ....g...............a. 113121935
NW_927717    10684586  ....g...............a. 10684607
NW_001842393 400816    ....g...............a. 400837
NT_028405    397214    ....g...............a. 397235
NC_000023    113964882 ....g...............a. 113964903
AC_000155    103551644 ....g...............a. 103551665
AC_000066    114400068 ....g...............a. 114400089
GL583044     1921620   ....c...............   1921601
GL583044     7325123     ........g........... 7325104
GL583199     692033     .t..................  692014
CM000497     97978614   .t..................  97978595
CM000501     5911315   ....c...............   5911296
CM000501     11362452    ........g........... 11362433
DS990663     39253425    ........g........... 39253444
DS990666     27676223   .t..................  27676242
CH003502     93290699   .t..................  93290680
DS990803     1880610   ....c...............   1880591
DS486028     27676478   .t..................  27676497
CH003506     5534030   ....c...............   5534011
CH003506     11119483    ........g........... 11119464
CH003454     98888303   .t..................  98888284
CH003458     6175063   ....c...............   6175044
CH003458     11607688    ........g........... 11607669
BL000002     103106640  .t..................  103106621
NW_001839071 27676478   .t..................  27676497
NW_925006    1870648   ....c...............   1870629
NW_925006    7311018     ........g........... 7310999
NW_923640    1182990    .t..................  1182971
NT_007933    41651146   .t..................  41651127
NT_009237    6191248   ....c...............   6191229
NT_009237    11626447    ........g........... 11626428
NW_001838022 39253622    ........g........... 39253641
NW_001838021 1880696   ....c...............   1880677
NT_079596    3014293    .t..................  3014274
NC_000007    103618303  .t..................  103618284
NC_000011    6251248   ....c...............   6251229
NC_000011    11686447    ........g........... 11686428
AC_000139    97978036   .t..................  97978017
AC_000143    5911321   ....c...............   5911302
AC_000143    11362420    ........g........... 11362401
AC_000068    102978725  .t..................  102978706
AC_000050    98424239   .t..................  98424220
AC_000054    6370324   ....c...............   6370305
AC_000054    11810694    ........g........... 11810675
  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 32,911,320
Number of extensions: 76
Number of successful extensions: 76
Number of sequences better than 1000.0: 64
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 76
Length of query: 22
Length of database: 31,910,071,267
Length adjustment: 16
Effective length of query: 6
Effective length of database: 31,910,047,347
Effective search space: 191460284082
Effective search space used: 191460284082
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)