BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1446
(25 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 31 110
gb|GL583062.1| Homo sapiens unplaced genomic scaffold scaff... 31 110
gb|DS990740.1| Homo sapiens SCAF_1112675836367 genomic scaf... 31 110
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 31 110
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 31 110
ref|NW_927719.1| Homo sapiens chromosome 2 genomic contig, ... 31 110
ref|NW_001838766.1| Homo sapiens chromosome 2 genomic conti... 31 110
ref|NT_005334.16| Homo sapiens chromosome 2 genomic contig,... 31 110
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 31 110
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 31 110
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 31 110
gb|GL583099.1| Homo sapiens unplaced genomic scaffold scaff... 30 134
gb|CM000500.1| Homo sapiens chromosome 10, whole genome sho... 30 134
gb|DS990793.1| Homo sapiens SCAF_1112675830356 genomic scaf... 30 134
gb|CH003505.1| Homo sapiens chromosome 10, whole genome sho... 30 134
gb|CH003457.1| Homo sapiens chromosome 10, whole genome sho... 30 134
ref|NW_924862.1| Homo sapiens chromosome 10 genomic contig,... 30 134
ref|NT_030059.13| Homo sapiens chromosome 10 genomic contig... 30 134
ref|NW_001837991.2| Homo sapiens chromosome 10 genomic cont... 30 134
ref|NC_000010.10| Homo sapiens chromosome 10, GRCh37.p2 pri... 30 134
ref|AC_000142.1| Homo sapiens chromosome 10, alternate asse... 30 134
ref|AC_000053.1| Homo sapiens chromosome 10, alternate asse... 30 134
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 618
gb|GL583001.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583077.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583222.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|CM000502.1| Homo sapiens chromosome 12, whole genome sho... 28 618
gb|CM000513.1| Homo sapiens chromosome X, whole genome shot... 28 618
gb|DS990653.1| Homo sapiens SCAF_1112675837330 genomic scaf... 28 618
gb|DS990764.1| Homo sapiens SCAF_1112675837335 genomic scaf... 28 618
gb|DS990850.1| Homo sapiens SCAF_1112675837196 genomic scaf... 28 618
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 618
gb|CH003507.1| Homo sapiens chromosome 12, whole genome sho... 28 618
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 28 618
gb|CH003470.1| Homo sapiens chromosome X, whole genome shot... 28 618
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 618
gb|CH003459.1| Homo sapiens chromosome 12, whole genome sho... 28 618
emb|CT009680.1| Human chromosome X complete sequence 28 618
ref|NW_927728.1| Homo sapiens chromosome X genomic contig, ... 28 618
ref|NW_001838884.2| Homo sapiens chromosome 3 genomic conti... 28 618
ref|NW_001842414.1| Homo sapiens chromosome X genomic conti... 28 618
ref|NW_921807.1| Homo sapiens chromosome 3 genomic contig, ... 28 618
ref|NW_925395.1| Homo sapiens chromosome 12 genomic contig,... 28 618
ref|NT_167198.1| Homo sapiens chromosome X genomic contig, ... 28 618
ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig,... 28 618
ref|NT_009755.19| Homo sapiens chromosome 12 genomic contig... 28 618
ref|NW_001838064.2| Homo sapiens chromosome 12 genomic cont... 28 618
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 28 618
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 618
ref|NC_000012.11| Homo sapiens chromosome 12, GRCh37.p2 pri... 28 618
ref|AC_000155.1| Homo sapiens chromosome X, alternate assem... 28 618
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 618
ref|AC_000144.1| Homo sapiens chromosome 12, alternate asse... 28 618
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 28 618
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 618
ref|AC_000055.1| Homo sapiens chromosome 12, alternate asse... 28 618
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 749
gb|GL582980.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL582983.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583007.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583052.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|CM000495.1| Homo sapiens chromosome 5, whole genome shot... 28 749
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 749
gb|CM000501.1| Homo sapiens chromosome 11, whole genome sho... 28 749
gb|DS990658.1| Homo sapiens SCAF_1112675837357 genomic scaf... 28 749
gb|DS990663.1| Homo sapiens SCAF_1112675837337 genomic scaf... 28 749
gb|DS990672.1| Homo sapiens SCAF_1112675837227 genomic scaf... 28 749
gb|DS990691.1| Homo sapiens SCAF_1112675837255 genomic scaf... 28 749
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 749
gb|CH003500.1| Homo sapiens chromosome 5, whole genome shot... 28 749
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 28 749
gb|CH003506.1| Homo sapiens chromosome 11, whole genome sho... 28 749
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 749
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 28 749
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 749
gb|CH003458.1| Homo sapiens chromosome 11, whole genome sho... 28 749
ref|NW_001838952.2| Homo sapiens chromosome 5 genomic conti... 28 749
ref|NW_001839132.1| Homo sapiens chromosome 8 genomic conti... 28 749
ref|NW_001838589.2| Homo sapiens chromosome 1 genomic conti... 28 749
ref|NW_922784.1| Homo sapiens chromosome 5 genomic contig, ... 28 749
ref|NW_925006.1| Homo sapiens chromosome 11 genomic contig,... 28 749
ref|NW_921795.1| Homo sapiens chromosome 1 genomic contig, ... 28 749
ref|NW_923929.1| Homo sapiens chromosome 8 genomic contig, ... 28 749
ref|NT_008183.19| Homo sapiens chromosome 8 genomic contig,... 28 749
ref|NT_034772.6| Homo sapiens chromosome 5 genomic contig, ... 28 749
ref|NT_032977.9| Homo sapiens chromosome 1 genomic contig, ... 28 749
ref|NT_009237.18| Homo sapiens chromosome 11 genomic contig... 28 749
ref|NW_001838022.2| Homo sapiens chromosome 11 genomic cont... 28 749
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 749
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 749
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 28 749
ref|NC_000011.9| Homo sapiens chromosome 11, GRCh37.p2 prim... 28 749
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 749
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 28 749
ref|AC_000143.1| Homo sapiens chromosome 11, alternate asse... 28 749
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 749
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 749
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 28 749
ref|AC_000054.1| Homo sapiens chromosome 11, alternate asse... 28 749
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 749
gb|GL583010.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000504.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|DS990675.1| Homo sapiens SCAF_1112675837128 genomic scaf... 28 907
gb|CH003509.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|CH003461.1| Homo sapiens chromosome 14, whole genome sho... 28 907
emb|AL954800.2| Human chromosome 14 complete sequence 28 907
ref|NW_925561.1| Homo sapiens chromosome 14 genomic contig,... 28 907
ref|NT_026437.12| Homo sapiens chromosome 14 genomic contig... 28 907
ref|NW_001838113.2| Homo sapiens chromosome 14 genomic cont... 28 907
ref|NC_000014.8| Homo sapiens chromosome 14, GRCh37.p2 prim... 28 907
ref|AC_000146.1| Homo sapiens chromosome 14, alternate asse... 28 907
ref|AC_000057.1| Homo sapiens chromosome 14, alternate asse... 28 907
1_0 1 gaacaaatggcactagtaaactgag 25
CM000492 14656324 ..t............g........ 14656301
GL583062 1470180 ..t............g........ 1470203
DS990740 6901554 ..t............g........ 6901531
CH003497 15720621 ..t............g........ 15720598
CH003449 14616285 ..t............g........ 14616262
NW_927719 14655882 ..t............g........ 14655859
NW_001838766 6901549 ..t............g........ 6901526
NT_005334 9687169 ..t............g........ 9687146
NC_000002 14805957 ..t............g........ 14805934
AC_000134 14656419 ..t............g........ 14656396
AC_000045 14723947 ..t............g........ 14723924
GL583099 5231603 ...............a...... 5231582
CM000500 77419897 ...............a...... 77419918
DS990793 2786848 ...............a...... 2786827
CH003505 80915769 ...............a...... 80915790
CH003457 76950022 ...............a...... 76950043
NW_924862 2457124 ...............a...... 2457145
NT_030059 34376138 ...............a...... 34376159
NW_001837991 2786956 ...............a...... 2786935
NC_000010 83571674 ...............a...... 83571695
AC_000142 77420148 ...............a...... 77420169
AC_000053 77567364 ...............a...... 77567385
CM000493 190707087 ............t.t.a....... 190707064
GL583001 1862502 ............t.t.a....... 1862525
GL583077 2534111 ............a..g....g... 2534088
GL583222 1545407 .........t.....a.....c.. 1545384
CM000502 123418583 ............a..g....g... 123418560
CM000513 139521393 .........t.....a.....c.. 139521370
DS990653 721372 ............t.t.a....... 721395
DS990764 2524778 ............a..g....g... 2524801
DS990850 1575637 .........t.....a.....c.. 1575614
CH003498 201264137 ............t.t.a....... 201264114
CH003507 132510356 ............a..g....g... 132510333
CH003518 117824328 .........t.....a.....c.. 117824351
CH003470 145335193 .........t.....a.....c.. 145335170
CH003450 191344730 ............t.t.a....... 191344707
CH003459 123766166 ............a..g....g... 123766143
CT009680 149547435 .........t.....a.....c.. 149547412
NW_927728 1851933 .........t.....a.....c.. 1851910
NW_001838884 721372 ............t.t.a....... 721395
NW_001842414 1575633 .........t.....a.....c.. 1575610
NW_921807 99921369 ............t.t.a....... 99921346
NW_925395 73681200 ............a..g....g... 73681177
NT_167198 1580922 .........t.....a.....c.. 1580899
NT_005612 99815634 ............t.t.a....... 99815611
NT_009755 3870146 ............a..g....g... 3870123
NW_001838064 2524784 ............a..g....g... 2524807
NC_000023 150662984 .........t.....a.....c.. 150662961
NC_000003 193320488 ............t.t.a....... 193320465
NC_000012 126450769 ............a..g....g... 126450746
AC_000155 139521245 .........t.....a.....c.. 139521222
AC_000135 190707659 ............t.t.a....... 190707636
AC_000144 123418994 ............a..g....g... 123418971
AC_000066 150911488 .........t.....a.....c.. 150911465
AC_000046 191735699 ............t.t.a....... 191735676
AC_000055 126057371 ............a..g....g... 126057348
CM000491 91670628 .........t.....a...... 91670607
GL582980 3205944 .........t.....a...... 3205923
GL582983 29699786 ...a......a........... 29699765
GL583007 9462698 .........t.....a...... 9462677
GL583052 6668859 ..............aa...... 6668880
CM000495 124508225 .........t.....a...... 124508204
CM000498 73019561 ...a......a........... 73019540
CM000501 42500180 ..............aa...... 42500159
DS990658 9468645 .........t.....a...... 9468666
DS990663 8115697 ..............aa...... 8115718
DS990672 29418569 ...a......a........... 29418548
DS990691 10558783 .........t.....a...... 10558804
CH003496 93252647 .........t.....a...... 93252626
CH003500 135537760 .........t.....a...... 135537739
CH003503 83107115 ...a......a........... 83107094
CH003506 44214522 ..............aa...... 44214501
CH003448 92562155 .........t.....a...... 92562134
CH003452 124437264 .........t.....a...... 124437285
CH003455 73301807 ...a......a........... 73301786
CH003458 42701673 ..............aa...... 42701652
NW_001838952 9468758 .........t.....a...... 9468779
NW_001839132 29418769 ...a......a........... 29418748
NW_001838589 10558670 .........t.....a...... 10558691
NW_922784 3074941 .........t.....a...... 3074920
NW_925006 38444935 ..............aa...... 38444914
NW_921795 9610853 .........t.....a...... 9610832
NW_923929 30660211 ...a......a........... 30660190
NT_008183 29398125 ...a......a........... 29398104
NT_034772 37630429 .........t.....a...... 37630408
NT_032977 63521709 .........t.....a...... 63521688
NT_009237 42731317 ..............aa...... 42731296
NW_001838022 8115662 ..............aa...... 8115683
NC_000001 93549791 .........t.....a...... 93549770
NC_000008 77533724 ...a......a........... 77533703
NC_000005 129316557 .........t.....a...... 129316536
NC_000011 42791317 ..............aa...... 42791296
AC_000140 73020001 ...a......a........... 73019980
AC_000137 124507950 .........t.....a...... 124507929
AC_000143 42500380 ..............aa...... 42500359
AC_000133 91671339 .........t.....a...... 91671318
AC_000051 73527146 ...a......a........... 73527125
AC_000048 125446925 .........t.....a...... 125446904
AC_000054 42944611 ..............aa...... 42944590
AC_000044 91803959 .........t.....a...... 91803938
GL583010 4311725 ...........g........ 4311744
CM000504 56865067 ...........g........ 56865048
DS990675 19042760 ...........g........ 19042779
CH003509 57298497 ...........g........ 57298478
CH003461 56494289 ...........g........ 56494270
AL954800 56617110 ...........g........ 56617091
NW_925561 23489731 ...........g........ 23489712
NT_026437 57697069 ...........g........ 57697050
NW_001838113 19043247 ...........g........ 19043266
NC_000014 76697069 ...........g........ 76697050
AC_000146 56865295 ...........g........ 56865276
AC_000057 56735201 ...........g........ 56735182
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 34,255,997
Number of extensions: 112
Number of successful extensions: 112
Number of sequences better than 1000.0: 112
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 112
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)