BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1447
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582981.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000496.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|DS990720.1| Homo sapiens SCAF_1112675835976 genomic scaf... 28 907
gb|CH003501.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CH003453.1| Homo sapiens chromosome 6, whole genome shot... 28 907
ref|NW_001838988.2| Homo sapiens chromosome 6 genomic conti... 28 907
ref|NW_923184.1| Homo sapiens chromosome 6 genomic contig, ... 28 907
ref|NT_025741.15| Homo sapiens chromosome 6 genomic contig,... 28 907
ref|NC_000006.11| Homo sapiens chromosome 6, GRCh37.p2 prim... 28 907
ref|AC_000138.1| Homo sapiens chromosome 6, alternate assem... 28 907
ref|AC_000049.1| Homo sapiens chromosome 6, alternate assem... 28 907
1_0 2 ttcgtggtattcttgctagt 21
GL582981 730880 ..t................. 730861
CM000496 101867918 ..t................. 101867899
DS990720 2035315 ..t................. 2035334
CH003501 105114421 ..t................. 105114402
CH003453 101203406 ..t................. 101203387
NW_001838988 2035419 ..t................. 2035438
NW_923184 37113364 ..t................. 37113345
NT_025741 8593790 ..t................. 8593771
NC_000006 104424333 ..t................. 104424314
AC_000138 101868071 ..t................. 101868052
AC_000049 105044760 ..t................. 105044741
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 20,266,018
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)