BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1452
(25 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582983.1| Homo sapiens unplaced genomic scaffold scaff... 31 110
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 31 110
gb|DS990672.1| Homo sapiens SCAF_1112675837227 genomic scaf... 31 110
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 31 110
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 31 110
ref|NW_001839132.1| Homo sapiens chromosome 8 genomic conti... 31 110
ref|NW_923929.1| Homo sapiens chromosome 8 genomic contig, ... 31 110
ref|NT_008183.19| Homo sapiens chromosome 8 genomic contig,... 31 110
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 31 110
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 31 110
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 31 110
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 30 237
gb|GL583067.1| Homo sapiens unplaced genomic scaffold scaff... 30 237
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 30 237
gb|DS990754.1| Homo sapiens SCAF_1112675837332 genomic scaf... 30 237
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 30 237
ref|NW_927841.1| Homo sapiens chromosome 1 genomic contig, ... 30 237
ref|NW_001838573.1| Homo sapiens chromosome 1 genomic conti... 30 237
ref|NT_004610.19| Homo sapiens chromosome 1 genomic contig,... 30 237
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 30 237
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 30 237
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 30 237
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 28 618
gb|GL583065.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|DS990654.1| Homo sapiens SCAF_1112675837378 genomic scaf... 28 618
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 28 618
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 28 618
ref|NW_927719.1| Homo sapiens chromosome 2 genomic contig, ... 28 618
ref|NW_001838769.1| Homo sapiens chromosome 2 genomic conti... 28 618
ref|NT_022184.15| Homo sapiens chromosome 2 genomic contig,... 28 618
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 28 618
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 28 618
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 28 618
gb|GL583006.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|DS990660.1| Homo sapiens SCAF_1112675837341 genomic scaf... 28 749
ref|NW_001838863.1| Homo sapiens chromosome 2 genomic conti... 28 749
ref|NW_921585.1| Homo sapiens chromosome 2 genomic contig, ... 28 749
ref|NT_005403.17| Homo sapiens chromosome 2 genomic contig,... 28 749
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|GL582988.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL582997.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583098.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000513.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|DS990657.1| Homo sapiens SCAF_1112675837360 genomic scaf... 28 907
gb|DS990673.1| Homo sapiens SCAF_1112675837361 genomic scaf... 28 907
gb|DS990688.1| Homo sapiens SCAF_1112675830807 genomic scaf... 28 907
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|CH003470.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 28 907
emb|CT009680.1| Human chromosome X complete sequence 28 907
ref|NW_927700.1| Homo sapiens chromosome X genomic contig, ... 28 907
ref|NW_001838921.1| Homo sapiens chromosome 4 genomic conti... 28 907
ref|NW_001842360.1| Homo sapiens chromosome X genomic conti... 28 907
ref|NW_001838860.1| Homo sapiens chromosome 2 genomic conti... 28 907
ref|NW_922217.1| Homo sapiens chromosome 4 genomic contig, ... 28 907
ref|NT_167197.1| Homo sapiens chromosome X genomic contig, ... 28 907
ref|NT_016354.19| Homo sapiens chromosome 4 genomic contig,... 28 907
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 28 907
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 28 907
ref|AC_000155.1| Homo sapiens chromosome X, alternate assem... 28 907
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 28 907
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 28 907
1_0 1 ggctggcattctatataagagagaa 25
GL582983 19489087 .............g..t....... 19489110
CM000498 62689745 .............g..t....... 62689768
DS990672 19088753 .............g..t....... 19088776
CH003503 72007544 .............g..t....... 72007567
CH003455 63005189 .............g..t....... 63005212
NW_001839132 19088940 .............g..t....... 19088963
NW_923929 20324807 .............g..t....... 20324830
NT_008183 19064450 .............g..t....... 19064473
NC_000008 67200049 .............g..t....... 67200072
AC_000140 62690172 .............g..t....... 62690195
AC_000051 63191742 .............g..t....... 63191765
CM000491 19461063 ..........g......t....a.. 19461039
GL583067 5408393 ..........g......t....a.. 5408417
CH003496 18904057 ..........g......t....a.. 18904033
CH003496 19405196 ..........g......t....a.. 19405172
DS990754 2836650 ..........g......t....a.. 2836626
CH003448 19849682 ..........g......t....a.. 19849658
NW_927841 4016857 ..........g......t....a.. 4016833
NW_001838573 2836614 ..........g......t....a.. 2836590
NT_004610 7895254 ..........g......t....a.. 7895230
NC_000001 21215166 ..........g......t....a.. 21215142
AC_000133 19460883 ..........g......t....a.. 19460859
AC_000044 19540414 ..........g......t....a.. 19540390
CM000492 83227362 .....a...g...t.......... 83227339
CM000492 81438148 .......t...........c.. 81438127
CM000492 185664081 .......t...........c.. 185664060
CM000492 147609574 ...............c.... 147609555
GL583065 232039 .....a...g...t.......... 232062
GL583065 1862277 .......t...........c.. 1862298
DS990654 53323718 .....a...g...t.......... 53323695
DS990654 51534504 .......t...........c.. 51534483
CH003497 86103738 .....a...g...t.......... 86103715
CH003497 84474375 .......t...........c.. 84474354
CH003497 198443450 .......t...........c.. 198443429
CH003497 157074920 ...............c.... 157074901
CH003449 83067568 .....a...g...t.......... 83067545
CH003449 81440885 .......t...........c.. 81440864
CH003449 184771406 .......t...........c.. 184771385
CH003449 146737511 ...............c.... 146737492
NW_927719 83094444 .....a...g...t.......... 83094421
NW_927719 81463384 .......t...........c.. 81463363
NW_001838769 53323203 .....a...g...t.......... 53323180
NW_001838769 51533960 .......t...........c.. 51533939
NT_022184 62155985 .....a...g...t.......... 62155962
NT_022184 60524509 .......t...........c.. 60524488
NC_000002 83334098 .....a...g...t.......... 83334075
NC_000002 81702622 .......t...........c.. 81702601
NC_000002 193803743 .......t...........c.. 193803722
NC_000002 155722838 ...............c.... 155722819
AC_000134 83226959 .....a...g...t.......... 83226936
AC_000134 81437716 .......t...........c.. 81437695
AC_000134 185663925 .......t...........c.. 185663904
AC_000134 147609661 ...............c.... 147609642
AC_000045 83162509 .....a...g...t.......... 83162486
AC_000045 81531449 .......t...........c.. 81531428
AC_000045 187398564 .......t...........c.. 187398543
AC_000045 149337207 ...............c.... 149337188
GL583006 1504835 .......t...........c.. 1504856
DS990660 19220454 .......t...........c.. 19220433
NW_001838863 19220231 .......t...........c.. 19220210
NW_921585 61588367 .......t...........c.. 61588346
NW_921585 23527010 ...............c.... 23526991
NT_005403 44013161 .......t...........c.. 44013140
NT_005403 5932256 ...............c.... 5932237
CM000494 161394932 ......a............. 161394913
GL582988 31651219 .a.................. 31651200
GL582997 22572159 ...............c.... 22572140
GL583098 1512981 ......a............. 1512962
CM000513 33703619 .a.................. 33703600
DS990657 25876261 ......a............. 25876242
DS990673 27494585 .a.................. 27494566
DS990688 5920074 ...............c.... 5920055
CH003518 122937448 .a.................. 122937467
CH003470 36775309 .a.................. 36775290
CH003451 162487980 ......a............. 162487961
CT009680 35518247 .a.................. 35518228
NW_927700 34489045 .a.................. 34489026
NW_001838921 25876128 ......a............. 25876109
NW_001842360 27494615 .a.................. 27494596
NW_001838860 5920206 ...............c.... 5920187
NW_922217 45229525 ......a............. 45229506
NT_167197 33844912 .a.................. 33844893
NT_016354 90187274 ......a............. 90187255
NC_000023 35963150 .a.................. 35963131
NC_000004 165639553 ......a............. 165639534
AC_000155 33703654 .a.................. 33703635
AC_000136 161393889 ......a............. 161393870
AC_000066 40090763 .a.................. 40090744
AC_000047 162972046 ......a............. 162972027
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 43,909,420
Number of extensions: 89
Number of successful extensions: 89
Number of sequences better than 1000.0: 63
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 89
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)