BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1469
         (25 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000492.1|  Homo sapiens chromosome 2, whole genome shot...    31     110
gb|GL583062.1|  Homo sapiens unplaced genomic scaffold scaff...    31     110
gb|DS990740.1|  Homo sapiens SCAF_1112675836367 genomic scaf...    31     110
gb|CH003497.1|  Homo sapiens chromosome 2, whole genome shot...    31     110
gb|CH003449.1|  Homo sapiens chromosome 2, whole genome shot...    31     110
ref|NW_927719.1|  Homo sapiens chromosome 2 genomic contig, ...    31     110
ref|NW_001838766.1|  Homo sapiens chromosome 2 genomic conti...    31     110
ref|NT_005334.16|  Homo sapiens chromosome 2 genomic contig,...    31     110
ref|NC_000002.11|  Homo sapiens chromosome 2, GRCh37.p2 prim...    31     110
ref|AC_000134.1|  Homo sapiens chromosome 2, alternate assem...    31     110
ref|AC_000045.1|  Homo sapiens chromosome 2, alternate assem...    31     110
gb|GL583099.1|  Homo sapiens unplaced genomic scaffold scaff...    30     134
gb|CM000500.1|  Homo sapiens chromosome 10, whole genome sho...    30     134
gb|DS990793.1|  Homo sapiens SCAF_1112675830356 genomic scaf...    30     134
gb|CH003505.1|  Homo sapiens chromosome 10, whole genome sho...    30     134
gb|CH003457.1|  Homo sapiens chromosome 10, whole genome sho...    30     134
ref|NW_924862.1|  Homo sapiens chromosome 10 genomic contig,...    30     134
ref|NT_030059.13|  Homo sapiens chromosome 10 genomic contig...    30     134
ref|NW_001837991.2|  Homo sapiens chromosome 10 genomic cont...    30     134
ref|NC_000010.10|  Homo sapiens chromosome 10, GRCh37.p2 pri...    30     134
ref|AC_000142.1|  Homo sapiens chromosome 10, alternate asse...    30     134
ref|AC_000053.1|  Homo sapiens chromosome 10, alternate asse...    30     134
gb|CM000493.1|  Homo sapiens chromosome 3, whole genome shot...    28     618
gb|GL583001.1|  Homo sapiens unplaced genomic scaffold scaff...    28     618
gb|GL583077.1|  Homo sapiens unplaced genomic scaffold scaff...    28     618
gb|GL583222.1|  Homo sapiens unplaced genomic scaffold scaff...    28     618
gb|CM000502.1|  Homo sapiens chromosome 12, whole genome sho...    28     618
gb|CM000513.1|  Homo sapiens chromosome X, whole genome shot...    28     618
gb|DS990653.1|  Homo sapiens SCAF_1112675837330 genomic scaf...    28     618
gb|DS990764.1|  Homo sapiens SCAF_1112675837335 genomic scaf...    28     618
gb|DS990850.1|  Homo sapiens SCAF_1112675837196 genomic scaf...    28     618
gb|CH003498.1|  Homo sapiens chromosome 3, whole genome shot...    28     618
gb|CH003507.1|  Homo sapiens chromosome 12, whole genome sho...    28     618
gb|CH003518.1|  Homo sapiens chromosome X, whole genome shot...    28     618
gb|CH003470.1|  Homo sapiens chromosome X, whole genome shot...    28     618
gb|CH003450.1|  Homo sapiens chromosome 3, whole genome shot...    28     618
gb|CH003459.1|  Homo sapiens chromosome 12, whole genome sho...    28     618
emb|CT009680.1|  Human chromosome X complete sequence              28     618
ref|NW_927728.1|  Homo sapiens chromosome X genomic contig, ...    28     618
ref|NW_001838884.2|  Homo sapiens chromosome 3 genomic conti...    28     618
ref|NW_001842414.1|  Homo sapiens chromosome X genomic conti...    28     618
ref|NW_921807.1|  Homo sapiens chromosome 3 genomic contig, ...    28     618
ref|NW_925395.1|  Homo sapiens chromosome 12 genomic contig,...    28     618
ref|NT_167198.1|  Homo sapiens chromosome X genomic contig, ...    28     618
ref|NT_005612.16|  Homo sapiens chromosome 3 genomic contig,...    28     618
ref|NT_009755.19|  Homo sapiens chromosome 12 genomic contig...    28     618
ref|NW_001838064.2|  Homo sapiens chromosome 12 genomic cont...    28     618
ref|NC_000023.10|  Homo sapiens chromosome X, GRCh37.p2 prim...    28     618
ref|NC_000003.11|  Homo sapiens chromosome 3, GRCh37.p2 prim...    28     618
ref|NC_000012.11|  Homo sapiens chromosome 12, GRCh37.p2 pri...    28     618
ref|AC_000155.1|  Homo sapiens chromosome X, alternate assem...    28     618
ref|AC_000135.1|  Homo sapiens chromosome 3, alternate assem...    28     618
ref|AC_000144.1|  Homo sapiens chromosome 12, alternate asse...    28     618
ref|AC_000066.1|  Homo sapiens chromosome X, alternate assem...    28     618
ref|AC_000046.1|  Homo sapiens chromosome 3, alternate assem...    28     618
ref|AC_000055.1|  Homo sapiens chromosome 12, alternate asse...    28     618
gb|CM000491.1|  Homo sapiens chromosome 1, whole genome shot...    28     749
gb|GL582980.1|  Homo sapiens unplaced genomic scaffold scaff...    28     749
gb|GL582983.1|  Homo sapiens unplaced genomic scaffold scaff...    28     749
gb|GL583007.1|  Homo sapiens unplaced genomic scaffold scaff...    28     749
gb|GL583052.1|  Homo sapiens unplaced genomic scaffold scaff...    28     749
gb|CM000495.1|  Homo sapiens chromosome 5, whole genome shot...    28     749
gb|CM000498.1|  Homo sapiens chromosome 8, whole genome shot...    28     749
gb|CM000501.1|  Homo sapiens chromosome 11, whole genome sho...    28     749
gb|DS990658.1|  Homo sapiens SCAF_1112675837357 genomic scaf...    28     749
gb|DS990663.1|  Homo sapiens SCAF_1112675837337 genomic scaf...    28     749
gb|DS990672.1|  Homo sapiens SCAF_1112675837227 genomic scaf...    28     749
gb|DS990691.1|  Homo sapiens SCAF_1112675837255 genomic scaf...    28     749
gb|CH003496.1|  Homo sapiens chromosome 1, whole genome shot...    28     749
gb|CH003500.1|  Homo sapiens chromosome 5, whole genome shot...    28     749
gb|CH003503.1|  Homo sapiens chromosome 8, whole genome shot...    28     749
gb|CH003506.1|  Homo sapiens chromosome 11, whole genome sho...    28     749
gb|CH003448.1|  Homo sapiens chromosome 1, whole genome shot...    28     749
gb|CH003452.1|  Homo sapiens chromosome 5, whole genome shot...    28     749
gb|CH003455.1|  Homo sapiens chromosome 8, whole genome shot...    28     749
gb|CH003458.1|  Homo sapiens chromosome 11, whole genome sho...    28     749
ref|NW_001838952.2|  Homo sapiens chromosome 5 genomic conti...    28     749
ref|NW_001839132.1|  Homo sapiens chromosome 8 genomic conti...    28     749
ref|NW_001838589.2|  Homo sapiens chromosome 1 genomic conti...    28     749
ref|NW_922784.1|  Homo sapiens chromosome 5 genomic contig, ...    28     749
ref|NW_925006.1|  Homo sapiens chromosome 11 genomic contig,...    28     749
ref|NW_921795.1|  Homo sapiens chromosome 1 genomic contig, ...    28     749
ref|NW_923929.1|  Homo sapiens chromosome 8 genomic contig, ...    28     749
ref|NT_008183.19|  Homo sapiens chromosome 8 genomic contig,...    28     749
ref|NT_034772.6|  Homo sapiens chromosome 5 genomic contig, ...    28     749
ref|NT_032977.9|  Homo sapiens chromosome 1 genomic contig, ...    28     749
ref|NT_009237.18|  Homo sapiens chromosome 11 genomic contig...    28     749
ref|NW_001838022.2|  Homo sapiens chromosome 11 genomic cont...    28     749
ref|NC_000001.10|  Homo sapiens chromosome 1, GRCh37.p2 prim...    28     749
ref|NC_000008.10|  Homo sapiens chromosome 8, GRCh37.p2 prim...    28     749
ref|NC_000005.9|  Homo sapiens chromosome 5, GRCh37.p2 prima...    28     749
ref|NC_000011.9|  Homo sapiens chromosome 11, GRCh37.p2 prim...    28     749
ref|AC_000140.1|  Homo sapiens chromosome 8, alternate assem...    28     749
ref|AC_000137.1|  Homo sapiens chromosome 5, alternate assem...    28     749
ref|AC_000143.1|  Homo sapiens chromosome 11, alternate asse...    28     749
ref|AC_000133.1|  Homo sapiens chromosome 1, alternate assem...    28     749
ref|AC_000051.1|  Homo sapiens chromosome 8, alternate assem...    28     749
ref|AC_000048.1|  Homo sapiens chromosome 5, alternate assem...    28     749
ref|AC_000054.1|  Homo sapiens chromosome 11, alternate asse...    28     749
ref|AC_000044.1|  Homo sapiens chromosome 1, alternate assem...    28     749
gb|GL583010.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000504.1|  Homo sapiens chromosome 14, whole genome sho...    28     907
gb|DS990675.1|  Homo sapiens SCAF_1112675837128 genomic scaf...    28     907
gb|CH003509.1|  Homo sapiens chromosome 14, whole genome sho...    28     907
gb|CH003461.1|  Homo sapiens chromosome 14, whole genome sho...    28     907
emb|AL954800.2|  Human chromosome 14 complete sequence             28     907
ref|NW_925561.1|  Homo sapiens chromosome 14 genomic contig,...    28     907
ref|NT_026437.12|  Homo sapiens chromosome 14 genomic contig...    28     907
ref|NW_001838113.2|  Homo sapiens chromosome 14 genomic cont...    28     907
ref|NC_000014.8|  Homo sapiens chromosome 14, GRCh37.p2 prim...    28     907
ref|AC_000146.1|  Homo sapiens chromosome 14, alternate asse...    28     907
ref|AC_000057.1|  Homo sapiens chromosome 14, alternate asse...    28     907
1_0          1         ctcagtttactagtgccatttgttc 25
CM000492     14656301  ........c............a..  14656324
GL583062     1470203   ........c............a..  1470180
DS990740     6901531   ........c............a..  6901554
CH003497     15720598  ........c............a..  15720621
CH003449     14616262  ........c............a..  14616285
NW_927719    14655859  ........c............a..  14655882
NW_001838766 6901526   ........c............a..  6901549
NT_005334    9687146   ........c............a..  9687169
NC_000002    14805934  ........c............a..  14805957
AC_000134    14656396  ........c............a..  14656419
AC_000045    14723924  ........c............a..  14723947
GL583099     5231582     ......t...............  5231603
CM000500     77419918    ......t...............  77419897
DS990793     2786827     ......t...............  2786848
CH003505     80915790    ......t...............  80915769
CH003457     76950043    ......t...............  76950022
NW_924862    2457145     ......t...............  2457124
NT_030059    34376159    ......t...............  34376138
NW_001837991 2786935     ......t...............  2786956
NC_000010    83571695    ......t...............  83571674
AC_000142    77420169    ......t...............  77420148
AC_000053    77567385    ......t...............  77567364
CM000493     190707064  .......t.a.a............ 190707087
GL583001     1862525    .......t.a.a............ 1862502
GL583077     2534088   ...c....c..t............  2534111
GL583222     1545384   ..g.....t.....a.........  1545407
CM000502     123418560 ...c....c..t............  123418583
CM000513     139521370 ..g.....t.....a.........  139521393
DS990653     721395     .......t.a.a............ 721372
DS990764     2524801   ...c....c..t............  2524778
DS990850     1575614   ..g.....t.....a.........  1575637
CH003498     201264114  .......t.a.a............ 201264137
CH003507     132510333 ...c....c..t............  132510356
CH003518     117824351 ..g.....t.....a.........  117824328
CH003470     145335170 ..g.....t.....a.........  145335193
CH003450     191344707  .......t.a.a............ 191344730
CH003459     123766143 ...c....c..t............  123766166
CT009680     149547412 ..g.....t.....a.........  149547435
NW_927728    1851910   ..g.....t.....a.........  1851933
NW_001838884 721395     .......t.a.a............ 721372
NW_001842414 1575610   ..g.....t.....a.........  1575633
NW_921807    99921346   .......t.a.a............ 99921369
NW_925395    73681177  ...c....c..t............  73681200
NT_167198    1580899   ..g.....t.....a.........  1580922
NT_005612    99815611   .......t.a.a............ 99815634
NT_009755    3870123   ...c....c..t............  3870146
NW_001838064 2524807   ...c....c..t............  2524784
NC_000023    150662961 ..g.....t.....a.........  150662984
NC_000003    193320465  .......t.a.a............ 193320488
NC_000012    126450746 ...c....c..t............  126450769
AC_000155    139521222 ..g.....t.....a.........  139521245
AC_000135    190707636  .......t.a.a............ 190707659
AC_000144    123418971 ...c....c..t............  123418994
AC_000066    150911465 ..g.....t.....a.........  150911488
AC_000046    191735676  .......t.a.a............ 191735699
AC_000055    126057348 ...c....c..t............  126057371
CM000491     91670607    ......t.....a.........  91670628
GL582980     3205923     ......t.....a.........  3205944
GL582983     29699765     ...........t......t... 29699786
GL583007     9462677     ......t.....a.........  9462698
GL583052     6668880     ......tt..............  6668859
CM000495     124508204   ......t.....a.........  124508225
CM000498     73019540     ...........t......t... 73019561
CM000501     42500159    ......tt..............  42500180
DS990658     9468666     ......t.....a.........  9468645
DS990663     8115718     ......tt..............  8115697
DS990672     29418548     ...........t......t... 29418569
DS990691     10558804    ......t.....a.........  10558783
CH003496     93252626    ......t.....a.........  93252647
CH003500     135537739   ......t.....a.........  135537760
CH003503     83107094     ...........t......t... 83107115
CH003506     44214501    ......tt..............  44214522
CH003448     92562134    ......t.....a.........  92562155
CH003452     124437285   ......t.....a.........  124437264
CH003455     73301786     ...........t......t... 73301807
CH003458     42701652    ......tt..............  42701673
NW_001838952 9468779     ......t.....a.........  9468758
NW_001839132 29418748     ...........t......t... 29418769
NW_001838589 10558691    ......t.....a.........  10558670
NW_922784    3074920     ......t.....a.........  3074941
NW_925006    38444914    ......tt..............  38444935
NW_921795    9610832     ......t.....a.........  9610853
NW_923929    30660190     ...........t......t... 30660211
NT_008183    29398104     ...........t......t... 29398125
NT_034772    37630408    ......t.....a.........  37630429
NT_032977    63521688    ......t.....a.........  63521709
NT_009237    42731296    ......tt..............  42731317
NW_001838022 8115683     ......tt..............  8115662
NC_000001    93549770    ......t.....a.........  93549791
NC_000008    77533703     ...........t......t... 77533724
NC_000005    129316536   ......t.....a.........  129316557
NC_000011    42791296    ......tt..............  42791317
AC_000140    73019980     ...........t......t... 73020001
AC_000137    124507929   ......t.....a.........  124507950
AC_000143    42500359    ......tt..............  42500380
AC_000133    91671318    ......t.....a.........  91671339
AC_000051    73527125     ...........t......t... 73527146
AC_000048    125446904   ......t.....a.........  125446925
AC_000054    42944590    ......tt..............  42944611
AC_000044    91803938    ......t.....a.........  91803959
GL583010     4311744     ........c...........    4311725
CM000504     56865048    ........c...........    56865067
DS990675     19042779    ........c...........    19042760
CH003509     57298478    ........c...........    57298497
CH003461     56494270    ........c...........    56494289
AL954800     56617091    ........c...........    56617110
NW_925561    23489712    ........c...........    23489731
NT_026437    57697050    ........c...........    57697069
NW_001838113 19043266    ........c...........    19043247
NC_000014    76697050    ........c...........    76697069
AC_000146    56865276    ........c...........    56865295
AC_000057    56735182    ........c...........    56735201
  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 34,255,997
Number of extensions: 112
Number of successful extensions: 112
Number of sequences better than 1000.0: 112
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 112
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)