BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1469
(25 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 31 110
gb|GL583062.1| Homo sapiens unplaced genomic scaffold scaff... 31 110
gb|DS990740.1| Homo sapiens SCAF_1112675836367 genomic scaf... 31 110
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 31 110
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 31 110
ref|NW_927719.1| Homo sapiens chromosome 2 genomic contig, ... 31 110
ref|NW_001838766.1| Homo sapiens chromosome 2 genomic conti... 31 110
ref|NT_005334.16| Homo sapiens chromosome 2 genomic contig,... 31 110
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 31 110
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 31 110
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 31 110
gb|GL583099.1| Homo sapiens unplaced genomic scaffold scaff... 30 134
gb|CM000500.1| Homo sapiens chromosome 10, whole genome sho... 30 134
gb|DS990793.1| Homo sapiens SCAF_1112675830356 genomic scaf... 30 134
gb|CH003505.1| Homo sapiens chromosome 10, whole genome sho... 30 134
gb|CH003457.1| Homo sapiens chromosome 10, whole genome sho... 30 134
ref|NW_924862.1| Homo sapiens chromosome 10 genomic contig,... 30 134
ref|NT_030059.13| Homo sapiens chromosome 10 genomic contig... 30 134
ref|NW_001837991.2| Homo sapiens chromosome 10 genomic cont... 30 134
ref|NC_000010.10| Homo sapiens chromosome 10, GRCh37.p2 pri... 30 134
ref|AC_000142.1| Homo sapiens chromosome 10, alternate asse... 30 134
ref|AC_000053.1| Homo sapiens chromosome 10, alternate asse... 30 134
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 618
gb|GL583001.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583077.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583222.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|CM000502.1| Homo sapiens chromosome 12, whole genome sho... 28 618
gb|CM000513.1| Homo sapiens chromosome X, whole genome shot... 28 618
gb|DS990653.1| Homo sapiens SCAF_1112675837330 genomic scaf... 28 618
gb|DS990764.1| Homo sapiens SCAF_1112675837335 genomic scaf... 28 618
gb|DS990850.1| Homo sapiens SCAF_1112675837196 genomic scaf... 28 618
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 618
gb|CH003507.1| Homo sapiens chromosome 12, whole genome sho... 28 618
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 28 618
gb|CH003470.1| Homo sapiens chromosome X, whole genome shot... 28 618
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 618
gb|CH003459.1| Homo sapiens chromosome 12, whole genome sho... 28 618
emb|CT009680.1| Human chromosome X complete sequence 28 618
ref|NW_927728.1| Homo sapiens chromosome X genomic contig, ... 28 618
ref|NW_001838884.2| Homo sapiens chromosome 3 genomic conti... 28 618
ref|NW_001842414.1| Homo sapiens chromosome X genomic conti... 28 618
ref|NW_921807.1| Homo sapiens chromosome 3 genomic contig, ... 28 618
ref|NW_925395.1| Homo sapiens chromosome 12 genomic contig,... 28 618
ref|NT_167198.1| Homo sapiens chromosome X genomic contig, ... 28 618
ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig,... 28 618
ref|NT_009755.19| Homo sapiens chromosome 12 genomic contig... 28 618
ref|NW_001838064.2| Homo sapiens chromosome 12 genomic cont... 28 618
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 28 618
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 618
ref|NC_000012.11| Homo sapiens chromosome 12, GRCh37.p2 pri... 28 618
ref|AC_000155.1| Homo sapiens chromosome X, alternate assem... 28 618
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 618
ref|AC_000144.1| Homo sapiens chromosome 12, alternate asse... 28 618
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 28 618
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 618
ref|AC_000055.1| Homo sapiens chromosome 12, alternate asse... 28 618
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 749
gb|GL582980.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL582983.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583007.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583052.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|CM000495.1| Homo sapiens chromosome 5, whole genome shot... 28 749
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 749
gb|CM000501.1| Homo sapiens chromosome 11, whole genome sho... 28 749
gb|DS990658.1| Homo sapiens SCAF_1112675837357 genomic scaf... 28 749
gb|DS990663.1| Homo sapiens SCAF_1112675837337 genomic scaf... 28 749
gb|DS990672.1| Homo sapiens SCAF_1112675837227 genomic scaf... 28 749
gb|DS990691.1| Homo sapiens SCAF_1112675837255 genomic scaf... 28 749
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 749
gb|CH003500.1| Homo sapiens chromosome 5, whole genome shot... 28 749
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 28 749
gb|CH003506.1| Homo sapiens chromosome 11, whole genome sho... 28 749
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 749
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 28 749
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 749
gb|CH003458.1| Homo sapiens chromosome 11, whole genome sho... 28 749
ref|NW_001838952.2| Homo sapiens chromosome 5 genomic conti... 28 749
ref|NW_001839132.1| Homo sapiens chromosome 8 genomic conti... 28 749
ref|NW_001838589.2| Homo sapiens chromosome 1 genomic conti... 28 749
ref|NW_922784.1| Homo sapiens chromosome 5 genomic contig, ... 28 749
ref|NW_925006.1| Homo sapiens chromosome 11 genomic contig,... 28 749
ref|NW_921795.1| Homo sapiens chromosome 1 genomic contig, ... 28 749
ref|NW_923929.1| Homo sapiens chromosome 8 genomic contig, ... 28 749
ref|NT_008183.19| Homo sapiens chromosome 8 genomic contig,... 28 749
ref|NT_034772.6| Homo sapiens chromosome 5 genomic contig, ... 28 749
ref|NT_032977.9| Homo sapiens chromosome 1 genomic contig, ... 28 749
ref|NT_009237.18| Homo sapiens chromosome 11 genomic contig... 28 749
ref|NW_001838022.2| Homo sapiens chromosome 11 genomic cont... 28 749
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 749
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 749
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 28 749
ref|NC_000011.9| Homo sapiens chromosome 11, GRCh37.p2 prim... 28 749
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 749
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 28 749
ref|AC_000143.1| Homo sapiens chromosome 11, alternate asse... 28 749
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 749
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 749
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 28 749
ref|AC_000054.1| Homo sapiens chromosome 11, alternate asse... 28 749
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 749
gb|GL583010.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000504.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|DS990675.1| Homo sapiens SCAF_1112675837128 genomic scaf... 28 907
gb|CH003509.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|CH003461.1| Homo sapiens chromosome 14, whole genome sho... 28 907
emb|AL954800.2| Human chromosome 14 complete sequence 28 907
ref|NW_925561.1| Homo sapiens chromosome 14 genomic contig,... 28 907
ref|NT_026437.12| Homo sapiens chromosome 14 genomic contig... 28 907
ref|NW_001838113.2| Homo sapiens chromosome 14 genomic cont... 28 907
ref|NC_000014.8| Homo sapiens chromosome 14, GRCh37.p2 prim... 28 907
ref|AC_000146.1| Homo sapiens chromosome 14, alternate asse... 28 907
ref|AC_000057.1| Homo sapiens chromosome 14, alternate asse... 28 907
1_0 1 ctcagtttactagtgccatttgttc 25
CM000492 14656301 ........c............a.. 14656324
GL583062 1470203 ........c............a.. 1470180
DS990740 6901531 ........c............a.. 6901554
CH003497 15720598 ........c............a.. 15720621
CH003449 14616262 ........c............a.. 14616285
NW_927719 14655859 ........c............a.. 14655882
NW_001838766 6901526 ........c............a.. 6901549
NT_005334 9687146 ........c............a.. 9687169
NC_000002 14805934 ........c............a.. 14805957
AC_000134 14656396 ........c............a.. 14656419
AC_000045 14723924 ........c............a.. 14723947
GL583099 5231582 ......t............... 5231603
CM000500 77419918 ......t............... 77419897
DS990793 2786827 ......t............... 2786848
CH003505 80915790 ......t............... 80915769
CH003457 76950043 ......t............... 76950022
NW_924862 2457145 ......t............... 2457124
NT_030059 34376159 ......t............... 34376138
NW_001837991 2786935 ......t............... 2786956
NC_000010 83571695 ......t............... 83571674
AC_000142 77420169 ......t............... 77420148
AC_000053 77567385 ......t............... 77567364
CM000493 190707064 .......t.a.a............ 190707087
GL583001 1862525 .......t.a.a............ 1862502
GL583077 2534088 ...c....c..t............ 2534111
GL583222 1545384 ..g.....t.....a......... 1545407
CM000502 123418560 ...c....c..t............ 123418583
CM000513 139521370 ..g.....t.....a......... 139521393
DS990653 721395 .......t.a.a............ 721372
DS990764 2524801 ...c....c..t............ 2524778
DS990850 1575614 ..g.....t.....a......... 1575637
CH003498 201264114 .......t.a.a............ 201264137
CH003507 132510333 ...c....c..t............ 132510356
CH003518 117824351 ..g.....t.....a......... 117824328
CH003470 145335170 ..g.....t.....a......... 145335193
CH003450 191344707 .......t.a.a............ 191344730
CH003459 123766143 ...c....c..t............ 123766166
CT009680 149547412 ..g.....t.....a......... 149547435
NW_927728 1851910 ..g.....t.....a......... 1851933
NW_001838884 721395 .......t.a.a............ 721372
NW_001842414 1575610 ..g.....t.....a......... 1575633
NW_921807 99921346 .......t.a.a............ 99921369
NW_925395 73681177 ...c....c..t............ 73681200
NT_167198 1580899 ..g.....t.....a......... 1580922
NT_005612 99815611 .......t.a.a............ 99815634
NT_009755 3870123 ...c....c..t............ 3870146
NW_001838064 2524807 ...c....c..t............ 2524784
NC_000023 150662961 ..g.....t.....a......... 150662984
NC_000003 193320465 .......t.a.a............ 193320488
NC_000012 126450746 ...c....c..t............ 126450769
AC_000155 139521222 ..g.....t.....a......... 139521245
AC_000135 190707636 .......t.a.a............ 190707659
AC_000144 123418971 ...c....c..t............ 123418994
AC_000066 150911465 ..g.....t.....a......... 150911488
AC_000046 191735676 .......t.a.a............ 191735699
AC_000055 126057348 ...c....c..t............ 126057371
CM000491 91670607 ......t.....a......... 91670628
GL582980 3205923 ......t.....a......... 3205944
GL582983 29699765 ...........t......t... 29699786
GL583007 9462677 ......t.....a......... 9462698
GL583052 6668880 ......tt.............. 6668859
CM000495 124508204 ......t.....a......... 124508225
CM000498 73019540 ...........t......t... 73019561
CM000501 42500159 ......tt.............. 42500180
DS990658 9468666 ......t.....a......... 9468645
DS990663 8115718 ......tt.............. 8115697
DS990672 29418548 ...........t......t... 29418569
DS990691 10558804 ......t.....a......... 10558783
CH003496 93252626 ......t.....a......... 93252647
CH003500 135537739 ......t.....a......... 135537760
CH003503 83107094 ...........t......t... 83107115
CH003506 44214501 ......tt.............. 44214522
CH003448 92562134 ......t.....a......... 92562155
CH003452 124437285 ......t.....a......... 124437264
CH003455 73301786 ...........t......t... 73301807
CH003458 42701652 ......tt.............. 42701673
NW_001838952 9468779 ......t.....a......... 9468758
NW_001839132 29418748 ...........t......t... 29418769
NW_001838589 10558691 ......t.....a......... 10558670
NW_922784 3074920 ......t.....a......... 3074941
NW_925006 38444914 ......tt.............. 38444935
NW_921795 9610832 ......t.....a......... 9610853
NW_923929 30660190 ...........t......t... 30660211
NT_008183 29398104 ...........t......t... 29398125
NT_034772 37630408 ......t.....a......... 37630429
NT_032977 63521688 ......t.....a......... 63521709
NT_009237 42731296 ......tt.............. 42731317
NW_001838022 8115683 ......tt.............. 8115662
NC_000001 93549770 ......t.....a......... 93549791
NC_000008 77533703 ...........t......t... 77533724
NC_000005 129316536 ......t.....a......... 129316557
NC_000011 42791296 ......tt.............. 42791317
AC_000140 73019980 ...........t......t... 73020001
AC_000137 124507929 ......t.....a......... 124507950
AC_000143 42500359 ......tt.............. 42500380
AC_000133 91671318 ......t.....a......... 91671339
AC_000051 73527125 ...........t......t... 73527146
AC_000048 125446904 ......t.....a......... 125446925
AC_000054 42944590 ......tt.............. 42944611
AC_000044 91803938 ......t.....a......... 91803959
GL583010 4311744 ........c........... 4311725
CM000504 56865048 ........c........... 56865067
DS990675 19042779 ........c........... 19042760
CH003509 57298478 ........c........... 57298497
CH003461 56494270 ........c........... 56494289
AL954800 56617091 ........c........... 56617110
NW_925561 23489712 ........c........... 23489731
NT_026437 57697050 ........c........... 57697069
NW_001838113 19043266 ........c........... 19043247
NC_000014 76697050 ........c........... 76697069
AC_000146 56865276 ........c........... 56865295
AC_000057 56735182 ........c........... 56735201
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 34,255,997
Number of extensions: 112
Number of successful extensions: 112
Number of sequences better than 1000.0: 112
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 112
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)