BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1471
(25 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583183.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|CM000513.1| Homo sapiens chromosome X, whole genome shot... 29 348
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 29 348
gb|CH003470.1| Homo sapiens chromosome X, whole genome shot... 29 348
emb|CT009680.1| Human chromosome X complete sequence 29 348
ref|NW_927716.1| Homo sapiens chromosome X genomic contig, ... 29 348
ref|NT_011651.17| Homo sapiens chromosome X genomic contig,... 29 348
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 29 348
ref|AC_000155.1| Homo sapiens chromosome X, alternate assem... 29 348
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 29 348
gb|CM000510.1| Homo sapiens chromosome 20, whole genome sho... 28 618
gb|DS990683.1| Homo sapiens SCAF_1112675837311 genomic scaf... 28 618
gb|CH003515.1| Homo sapiens chromosome 20, whole genome sho... 28 618
gb|CH003467.1| Homo sapiens chromosome 20, whole genome sho... 28 618
ref|NW_927317.1| Homo sapiens chromosome 20 genomic contig,... 28 618
ref|NW_001838652.1| Homo sapiens chromosome 20 genomic cont... 28 618
ref|NT_011387.8| Homo sapiens chromosome 20 genomic contig,... 28 618
ref|NC_000020.10| Homo sapiens chromosome 20, GRCh37.p2 pri... 28 618
ref|AC_000152.1| Homo sapiens chromosome 20, alternate asse... 28 618
ref|AC_000063.1| Homo sapiens chromosome 20, alternate asse... 28 618
1_0 2 tgatgtggtattgggggccaagtc 25
GL583183 2747747 ...c................. 2747767
CM000513 92390852 ...c................. 92390832
CH003518 74815821 ...c................. 74815801
CH003470 95916667 ...c................. 95916647
CT009680 101942073 ...c................. 101942053
NW_927716 1144474 ...c................. 1144454
NT_011651 26031049 ...c................. 26031029
NC_000023 102734741 ...c................. 102734721
AC_000155 92390794 ...c................. 92390774
AC_000066 103173793 ...c................. 103173773
CM000510 10906956 .....a...c...a.......... 10906933
DS990683 10906956 .....a...c...a.......... 10906933
CH003515 11524146 .....a...c...a.......... 11524123
CH003467 10883681 .....a...c...a.......... 10883658
NW_927317 10883530 .....a...c...a.......... 10883507
NW_001838652 10907202 .....a...c...a.......... 10907179
NT_011387 10896373 .....a...c...a.......... 10896350
NC_000020 10956373 .....a...c...a.......... 10956350
AC_000152 10907202 .....a...c...a.......... 10907179
AC_000063 11026354 .....a...c...a.......... 11026331
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 26,621,206
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 1000.0: 22
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)