BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1472
         (25 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583255.1|  Homo sapiens unplaced genomic scaffold scaff...    30     237
gb|CM000496.1|  Homo sapiens chromosome 6, whole genome shot...    30     237
gb|DS990794.1|  Homo sapiens SCAF_1112675837085 genomic scaf...    30     237
gb|CH003501.1|  Homo sapiens chromosome 6, whole genome shot...    30     237
gb|CH003453.1|  Homo sapiens chromosome 6, whole genome shot...    30     237
ref|NW_001838985.2|  Homo sapiens chromosome 6 genomic conti...    30     237
ref|NW_923095.1|  Homo sapiens chromosome 6 genomic contig, ...    30     237
ref|NT_007299.13|  Homo sapiens chromosome 6 genomic contig,...    30     237
ref|NC_000006.11|  Homo sapiens chromosome 6, GRCh37.p2 prim...    30     237
ref|AC_000138.1|  Homo sapiens chromosome 6, alternate assem...    30     237
ref|AC_000049.1|  Homo sapiens chromosome 6, alternate assem...    30     237

1_0          1        tggccaaaattcgcagtccccaacc 25
GL583255     1442741  ...a...g...a............. 1442765
CM000496     61596434 ...a...g...a............. 61596410
DS990794     4100117  ...a...g...a............. 4100141
CH003501     63834810 ...a...g...a............. 63834786
CH003453     60930834 ...a...g...a............. 60930810
NW_001838985 4100199  ...a...g...a............. 4100223
NW_923095    3106950  ...a...g...a............. 3106926
NT_007299    2535396  ...a...g...a............. 2535372
NC_000006    64415562 ...a...g...a............. 64415538
AC_000138    61596309 ...a...g...a............. 61596285
AC_000049    62576099 ...a...g...a............. 62576075

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 27,352,052
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)