BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1473
         (25 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583163.1|  Homo sapiens unplaced genomic scaffold scaff...    31     110
gb|CM000506.1|  Homo sapiens chromosome 16, whole genome sho...    31     110
gb|DS990726.1|  Homo sapiens SCAF_1112675836616 genomic scaf...    31     110
gb|CH003511.1|  Homo sapiens chromosome 16, whole genome sho...    31     110
gb|CH003463.1|  Homo sapiens chromosome 16, whole genome sho...    31     110
ref|NW_926528.1|  Homo sapiens chromosome 16 genomic contig,...    31     110
ref|NW_001838328.2|  Homo sapiens chromosome 16 genomic cont...    31     110
ref|NT_010498.15|  Homo sapiens chromosome 16 genomic contig...    31     110
ref|NC_000016.9|  Homo sapiens chromosome 16, GRCh37.p2 prim...    31     110
ref|AC_000148.1|  Homo sapiens chromosome 16, alternate asse...    31     110
ref|AC_000059.1|  Homo sapiens chromosome 16, alternate asse...    31     110
gb|GL583002.1|  Homo sapiens unplaced genomic scaffold scaff...    28     618
gb|GL583018.1|  Homo sapiens unplaced genomic scaffold scaff...    28     618
gb|GL583042.1|  Homo sapiens unplaced genomic scaffold scaff...    28     618
gb|GL583194.1|  Homo sapiens unplaced genomic scaffold scaff...    28     618
gb|CM000502.1|  Homo sapiens chromosome 12, whole genome sho...    28     618
gb|CM000503.1|  Homo sapiens chromosome 13, whole genome sho...    28     618
gb|CM000507.1|  Homo sapiens chromosome 17, whole genome sho...    28     618
gb|CM000510.1|  Homo sapiens chromosome 20, whole genome sho...    28     618
gb|DS990697.1|  Homo sapiens SCAF_1112675837305 genomic scaf...    28     618
gb|DS990712.1|  Homo sapiens SCAF_1112675837225 genomic scaf...    28     618
gb|DS990788.1|  Homo sapiens SCAF_1112675832497 genomic scaf...    28     618
gb|DS990812.1|  Homo sapiens SCAF_1112675832246 genomic scaf...    28     618
gb|CH003507.1|  Homo sapiens chromosome 12, whole genome sho...    28     618
gb|CH003508.1|  Homo sapiens chromosome 13, whole genome sho...    28     618
gb|CH003512.1|  Homo sapiens chromosome 17, whole genome sho...    28     618
gb|CH003515.1|  Homo sapiens chromosome 20, whole genome sho...    28     618
gb|CH003459.1|  Homo sapiens chromosome 12, whole genome sho...    28     618
gb|CH003460.1|  Homo sapiens chromosome 13, whole genome sho...    28     618
gb|CH003464.1|  Homo sapiens chromosome 17, whole genome sho...    28     618
gb|CH003467.1|  Homo sapiens chromosome 20, whole genome sho...    28     618
ref|NW_927339.1|  Homo sapiens chromosome 20 genomic contig,...    28     618
ref|NW_926894.1|  Homo sapiens chromosome 17 genomic contig,...    28     618
ref|NW_001838666.1|  Homo sapiens chromosome 20 genomic cont...    28     618
ref|NW_001838448.1|  Homo sapiens chromosome 17 genomic cont...    28     618
ref|NW_925395.1|  Homo sapiens chromosome 12 genomic contig,...    28     618
ref|NW_925473.1|  Homo sapiens chromosome 13 genomic contig,...    28     618
ref|NT_010783.15|  Homo sapiens chromosome 17 genomic contig...    28     618
ref|NT_024524.14|  Homo sapiens chromosome 13 genomic contig...    28     618
ref|NT_029419.12|  Homo sapiens chromosome 12 genomic contig...    28     618
ref|NW_001838059.1|  Homo sapiens chromosome 12 genomic cont...    28     618
ref|NW_001838070.1|  Homo sapiens chromosome 13 genomic cont...    28     618
ref|NC_000017.10|  Homo sapiens chromosome 17, GRCh37.p2 pri...    28     618
ref|NC_000013.10|  Homo sapiens chromosome 13, GRCh37.p2 pri...    28     618
ref|NC_000012.11|  Homo sapiens chromosome 12, GRCh37.p2 pri...    28     618
ref|AC_000152.1|  Homo sapiens chromosome 20, alternate asse...    28     618
ref|AC_000149.1|  Homo sapiens chromosome 17, alternate asse...    28     618
ref|AC_000145.1|  Homo sapiens chromosome 13, alternate asse...    28     618
ref|AC_000144.1|  Homo sapiens chromosome 12, alternate asse...    28     618
ref|AC_000063.1|  Homo sapiens chromosome 20, alternate asse...    28     618
ref|AC_000060.1|  Homo sapiens chromosome 17, alternate asse...    28     618
ref|AC_000056.1|  Homo sapiens chromosome 13, alternate asse...    28     618
ref|AC_000055.1|  Homo sapiens chromosome 12, alternate asse...    28     618
gb|GL583033.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CH003497.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
gb|CH003449.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
ref|NW_001838863.1|  Homo sapiens chromosome 2 genomic conti...    28     907
ref|NW_921618.1|  Homo sapiens chromosome 2 genomic contig, ...    28     907
ref|NT_005403.17|  Homo sapiens chromosome 2 genomic contig,...    28     907
ref|NC_000002.11|  Homo sapiens chromosome 2, GRCh37.p2 prim...    28     907
ref|AC_000134.1|  Homo sapiens chromosome 2, alternate assem...    28     907
ref|AC_000045.1|  Homo sapiens chromosome 2, alternate assem...    28     907
1_0          1         tccccgtctgtgccttctcatctgc 25
GL583163     1880366    ...t..........c......... 1880389
CM000506     62226752   ...t..........c......... 62226775
DS990726     9072447    ...t..........c......... 9072424
CH003511     61277925   ...t..........c......... 61277902
CH003463     57442285   ...t..........c......... 57442308
NW_926528    2006937    ...t..........c......... 2006960
NW_001838328 9072477    ...t..........c......... 9072454
NT_010498    30078766   ...t..........c......... 30078789
NC_000016    76464567   ...t..........c......... 76464590
AC_000148    62225981   ...t..........c......... 62226004
AC_000059    60767023   ...t..........c......... 60767046
GL583002     2318089   .....t..a...........g...  2318112
GL583018     8657488    ...t..g....t............ 8657511
GL583042     6565641   ....a..............t.t..  6565664
GL583194     1698795    ....tc............c..... 1698772
GL583194     2431140    ....a......g..........   2431161
CM000502     50494788   ....tc............c..... 50494811
CM000502     49760111   ....a......g..........   49760090
CM000503     8091822   .....t..a...........g...  8091845
CM000507     47628571  ....a..............t.t..  47628594
CM000510     45796946   ...t..g....t............ 45796969
DS990697     12117886   ...t..g....t............ 12117909
DS990712     7496243   ....a..............t.t..  7496266
DS990788     720732     ....tc............c..... 720755
DS990812     3644213   .....t..a...........g...  3644236
CH003507     52443816   ....tc............c..... 52443839
CH003507     51696844   ....a......g..........   51696823
CH003508     8233185   .....t..a...........g...  8233208
CH003512     51659584  ....a..............t.t..  51659607
CH003515     50703035   ...t..g....t............ 50703058
CH003459     50890485   ....tc............c..... 50890508
CH003460     7877522   .....t..a...........g...  7877545
CH003464     51422377  ....a..............t.t..  51422400
CH003467     45693571   ...t..g....t............ 45693594
NW_927339    19255497   ...t..g....t............ 19255520
NW_926894    6662627   ....a..............t.t..  6662650
NW_001838666 12117821   ...t..g....t............ 12117844
NW_001838448 7496230   ....a..............t.t..  7496253
NW_925395    723249     ....tc............c..... 723272
NW_925473    8072706   .....t..a...........g...  8072729
NT_010783    17543365  ....a..............t.t..  17543388
NT_024524    8248511   .....t..a...........g...  8248534
NT_029419    15594831   ....tc............c..... 15594854
NT_029419    14859536   ....a......g..........   14859515
NW_001838059 720769     ....tc............c..... 720792
NW_001838070 3644019   .....t..a...........g...  3644042
NC_000017    52269213  ....a..............t.t..  52269236
NC_000013    27268511  .....t..a...........g...  27268534
NC_000012    53451525   ....tc............c..... 53451548
NC_000012    52716230   ....a......g..........   52716209
AC_000152    45796972   ...t..g....t............ 45796995
AC_000149    47628250  ....a..............t.t..  47628273
AC_000145    8091894   .....t..a...........g...  8091917
AC_000144    50494609   ....tc............c..... 50494632
AC_000144    49759895   ....a......g..........   49759874
AC_000063    45752388   ...t..g....t............ 45752411
AC_000060    48731605  ....a..............t.t..  48731628
AC_000056    8337482   .....t..a...........g...  8337505
AC_000055    53099420   ....tc............c..... 53099443
GL583033     2140915        .....g.............. 2140934
CH003497     210379363      .....g.............. 210379382
CH003449     198518723      .....g.............. 198518704
NW_001838863 32867330       .....g.............. 32867311
NW_921618    12137444       .....g.............. 12137425
NT_005403    57670922       .....g.............. 57670903
NC_000002    207461504      .....g.............. 207461485
AC_000134    199311024      .....g.............. 199311005
AC_000045    201222914      .....g.............. 201222895
  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 32,228,526
Number of extensions: 68
Number of successful extensions: 68
Number of sequences better than 1000.0: 62
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 68
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)