BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1473
(25 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583163.1| Homo sapiens unplaced genomic scaffold scaff... 31 110
gb|CM000506.1| Homo sapiens chromosome 16, whole genome sho... 31 110
gb|DS990726.1| Homo sapiens SCAF_1112675836616 genomic scaf... 31 110
gb|CH003511.1| Homo sapiens chromosome 16, whole genome sho... 31 110
gb|CH003463.1| Homo sapiens chromosome 16, whole genome sho... 31 110
ref|NW_926528.1| Homo sapiens chromosome 16 genomic contig,... 31 110
ref|NW_001838328.2| Homo sapiens chromosome 16 genomic cont... 31 110
ref|NT_010498.15| Homo sapiens chromosome 16 genomic contig... 31 110
ref|NC_000016.9| Homo sapiens chromosome 16, GRCh37.p2 prim... 31 110
ref|AC_000148.1| Homo sapiens chromosome 16, alternate asse... 31 110
ref|AC_000059.1| Homo sapiens chromosome 16, alternate asse... 31 110
gb|GL583002.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583018.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583042.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583194.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|CM000502.1| Homo sapiens chromosome 12, whole genome sho... 28 618
gb|CM000503.1| Homo sapiens chromosome 13, whole genome sho... 28 618
gb|CM000507.1| Homo sapiens chromosome 17, whole genome sho... 28 618
gb|CM000510.1| Homo sapiens chromosome 20, whole genome sho... 28 618
gb|DS990697.1| Homo sapiens SCAF_1112675837305 genomic scaf... 28 618
gb|DS990712.1| Homo sapiens SCAF_1112675837225 genomic scaf... 28 618
gb|DS990788.1| Homo sapiens SCAF_1112675832497 genomic scaf... 28 618
gb|DS990812.1| Homo sapiens SCAF_1112675832246 genomic scaf... 28 618
gb|CH003507.1| Homo sapiens chromosome 12, whole genome sho... 28 618
gb|CH003508.1| Homo sapiens chromosome 13, whole genome sho... 28 618
gb|CH003512.1| Homo sapiens chromosome 17, whole genome sho... 28 618
gb|CH003515.1| Homo sapiens chromosome 20, whole genome sho... 28 618
gb|CH003459.1| Homo sapiens chromosome 12, whole genome sho... 28 618
gb|CH003460.1| Homo sapiens chromosome 13, whole genome sho... 28 618
gb|CH003464.1| Homo sapiens chromosome 17, whole genome sho... 28 618
gb|CH003467.1| Homo sapiens chromosome 20, whole genome sho... 28 618
ref|NW_927339.1| Homo sapiens chromosome 20 genomic contig,... 28 618
ref|NW_926894.1| Homo sapiens chromosome 17 genomic contig,... 28 618
ref|NW_001838666.1| Homo sapiens chromosome 20 genomic cont... 28 618
ref|NW_001838448.1| Homo sapiens chromosome 17 genomic cont... 28 618
ref|NW_925395.1| Homo sapiens chromosome 12 genomic contig,... 28 618
ref|NW_925473.1| Homo sapiens chromosome 13 genomic contig,... 28 618
ref|NT_010783.15| Homo sapiens chromosome 17 genomic contig... 28 618
ref|NT_024524.14| Homo sapiens chromosome 13 genomic contig... 28 618
ref|NT_029419.12| Homo sapiens chromosome 12 genomic contig... 28 618
ref|NW_001838059.1| Homo sapiens chromosome 12 genomic cont... 28 618
ref|NW_001838070.1| Homo sapiens chromosome 13 genomic cont... 28 618
ref|NC_000017.10| Homo sapiens chromosome 17, GRCh37.p2 pri... 28 618
ref|NC_000013.10| Homo sapiens chromosome 13, GRCh37.p2 pri... 28 618
ref|NC_000012.11| Homo sapiens chromosome 12, GRCh37.p2 pri... 28 618
ref|AC_000152.1| Homo sapiens chromosome 20, alternate asse... 28 618
ref|AC_000149.1| Homo sapiens chromosome 17, alternate asse... 28 618
ref|AC_000145.1| Homo sapiens chromosome 13, alternate asse... 28 618
ref|AC_000144.1| Homo sapiens chromosome 12, alternate asse... 28 618
ref|AC_000063.1| Homo sapiens chromosome 20, alternate asse... 28 618
ref|AC_000060.1| Homo sapiens chromosome 17, alternate asse... 28 618
ref|AC_000056.1| Homo sapiens chromosome 13, alternate asse... 28 618
ref|AC_000055.1| Homo sapiens chromosome 12, alternate asse... 28 618
gb|GL583033.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 28 907
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 28 907
ref|NW_001838863.1| Homo sapiens chromosome 2 genomic conti... 28 907
ref|NW_921618.1| Homo sapiens chromosome 2 genomic contig, ... 28 907
ref|NT_005403.17| Homo sapiens chromosome 2 genomic contig,... 28 907
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 28 907
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 28 907
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 28 907
1_0 1 tccccgtctgtgccttctcatctgc 25
GL583163 1880366 ...t..........c......... 1880389
CM000506 62226752 ...t..........c......... 62226775
DS990726 9072447 ...t..........c......... 9072424
CH003511 61277925 ...t..........c......... 61277902
CH003463 57442285 ...t..........c......... 57442308
NW_926528 2006937 ...t..........c......... 2006960
NW_001838328 9072477 ...t..........c......... 9072454
NT_010498 30078766 ...t..........c......... 30078789
NC_000016 76464567 ...t..........c......... 76464590
AC_000148 62225981 ...t..........c......... 62226004
AC_000059 60767023 ...t..........c......... 60767046
GL583002 2318089 .....t..a...........g... 2318112
GL583018 8657488 ...t..g....t............ 8657511
GL583042 6565641 ....a..............t.t.. 6565664
GL583194 1698795 ....tc............c..... 1698772
GL583194 2431140 ....a......g.......... 2431161
CM000502 50494788 ....tc............c..... 50494811
CM000502 49760111 ....a......g.......... 49760090
CM000503 8091822 .....t..a...........g... 8091845
CM000507 47628571 ....a..............t.t.. 47628594
CM000510 45796946 ...t..g....t............ 45796969
DS990697 12117886 ...t..g....t............ 12117909
DS990712 7496243 ....a..............t.t.. 7496266
DS990788 720732 ....tc............c..... 720755
DS990812 3644213 .....t..a...........g... 3644236
CH003507 52443816 ....tc............c..... 52443839
CH003507 51696844 ....a......g.......... 51696823
CH003508 8233185 .....t..a...........g... 8233208
CH003512 51659584 ....a..............t.t.. 51659607
CH003515 50703035 ...t..g....t............ 50703058
CH003459 50890485 ....tc............c..... 50890508
CH003460 7877522 .....t..a...........g... 7877545
CH003464 51422377 ....a..............t.t.. 51422400
CH003467 45693571 ...t..g....t............ 45693594
NW_927339 19255497 ...t..g....t............ 19255520
NW_926894 6662627 ....a..............t.t.. 6662650
NW_001838666 12117821 ...t..g....t............ 12117844
NW_001838448 7496230 ....a..............t.t.. 7496253
NW_925395 723249 ....tc............c..... 723272
NW_925473 8072706 .....t..a...........g... 8072729
NT_010783 17543365 ....a..............t.t.. 17543388
NT_024524 8248511 .....t..a...........g... 8248534
NT_029419 15594831 ....tc............c..... 15594854
NT_029419 14859536 ....a......g.......... 14859515
NW_001838059 720769 ....tc............c..... 720792
NW_001838070 3644019 .....t..a...........g... 3644042
NC_000017 52269213 ....a..............t.t.. 52269236
NC_000013 27268511 .....t..a...........g... 27268534
NC_000012 53451525 ....tc............c..... 53451548
NC_000012 52716230 ....a......g.......... 52716209
AC_000152 45796972 ...t..g....t............ 45796995
AC_000149 47628250 ....a..............t.t.. 47628273
AC_000145 8091894 .....t..a...........g... 8091917
AC_000144 50494609 ....tc............c..... 50494632
AC_000144 49759895 ....a......g.......... 49759874
AC_000063 45752388 ...t..g....t............ 45752411
AC_000060 48731605 ....a..............t.t.. 48731628
AC_000056 8337482 .....t..a...........g... 8337505
AC_000055 53099420 ....tc............c..... 53099443
GL583033 2140915 .....g.............. 2140934
CH003497 210379363 .....g.............. 210379382
CH003449 198518723 .....g.............. 198518704
NW_001838863 32867330 .....g.............. 32867311
NW_921618 12137444 .....g.............. 12137425
NT_005403 57670922 .....g.............. 57670903
NC_000002 207461504 .....g.............. 207461485
AC_000134 199311024 .....g.............. 199311005
AC_000045 201222914 .....g.............. 201222895
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 32,228,526
Number of extensions: 68
Number of successful extensions: 68
Number of sequences better than 1000.0: 62
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 68
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)