BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1474
(25 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000497.1| Homo sapiens chromosome 7, whole genome shot... 29 422
gb|CH003502.1| Homo sapiens chromosome 7, whole genome shot... 29 422
gb|CH003454.1| Homo sapiens chromosome 7, whole genome shot... 29 422
tpg|BL000002.1| TPA: Homo sapiens chromosome 7 29 422
ref|NT_007914.15| Homo sapiens chromosome 7 genomic contig,... 29 422
ref|NT_079596.2| Homo sapiens chromosome 7 genomic contig, ... 29 422
ref|NC_000007.13| Homo sapiens chromosome 7, GRCh37.p2 prim... 29 422
ref|AC_000139.1| Homo sapiens chromosome 7, alternate assem... 29 422
ref|AC_000068.1| Homo sapiens chromosome 7, alternate assem... 29 422
ref|AC_000050.1| Homo sapiens chromosome 7, alternate assem... 29 422
gb|GL583082.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|CM000496.1| Homo sapiens chromosome 6, whole genome shot... 28 618
gb|DS990720.1| Homo sapiens SCAF_1112675835976 genomic scaf... 28 618
gb|CH003501.1| Homo sapiens chromosome 6, whole genome shot... 28 618
gb|CH003453.1| Homo sapiens chromosome 6, whole genome shot... 28 618
ref|NW_001838988.2| Homo sapiens chromosome 6 genomic conti... 28 618
ref|NW_923184.1| Homo sapiens chromosome 6 genomic contig, ... 28 618
ref|NT_025741.15| Homo sapiens chromosome 6 genomic contig,... 28 618
ref|NC_000006.11| Homo sapiens chromosome 6, GRCh37.p2 prim... 28 618
ref|AC_000138.1| Homo sapiens chromosome 6, alternate assem... 28 618
ref|AC_000049.1| Homo sapiens chromosome 6, alternate assem... 28 618
1_0 1 agaagatctcaatctcgggaatct 24
CM000497 137836992 ................... 137837010
CH003502 132785524 ................... 132785542
CH003454 138623780 ................... 138623798
BL000002 142930245 ................... 142930263
NT_007914 4232881 ................... 4232899
NT_079596 43010995 ................... 43011013
NC_000007 143637258 ................... 143637276
AC_000139 137836764 ................... 137836782
AC_000068 142975427 ................... 142975445
AC_000050 138270587 ................... 138270605
GL583082 761049 ............a..tt....... 761026
CM000496 93725749 ............a..tt....... 93725726
DS990720 10177484 ............a..tt....... 10177507
CH003501 96727099 ............a..tt....... 96727076
CH003453 93110796 ............a..tt....... 93110773
NW_001838988 10177518 ............a..tt....... 10177541
NW_923184 29002844 ............a..tt....... 29002821
NT_025741 462496 ............a..tt....... 462473
NC_000006 96293039 ............a..tt....... 96293016
AC_000138 93725972 ............a..tt....... 93725949
AC_000049 96934240 ............a..tt....... 96934217
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 24,212,204
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 1000.0: 21
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 21
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)