BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1478
         (23 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000492.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
gb|GL583033.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|DS990660.1|  Homo sapiens SCAF_1112675837341 genomic scaf...    28     907
gb|CH003497.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
gb|CH003449.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
ref|NW_001838863.1|  Homo sapiens chromosome 2 genomic conti...    28     907
ref|NW_921618.1|  Homo sapiens chromosome 2 genomic contig, ...    28     907
ref|NT_005403.17|  Homo sapiens chromosome 2 genomic contig,...    28     907
ref|NC_000002.11|  Homo sapiens chromosome 2, GRCh37.p2 prim...    28     907
ref|AC_000134.1|  Homo sapiens chromosome 2, alternate assem...    28     907
ref|AC_000045.1|  Homo sapiens chromosome 2, alternate assem...    28     907

1_0          1         ggaggctgtaggcataaatt 20
CM000492     199947084 ..............g..... 199947065
GL583033     1506016   ..............g..... 1506035
DS990660     33503457  ..............g..... 33503438
CH003497     209751077 ..............g..... 209751096
CH003449     199157363 ..............g..... 199157344
NW_001838863 33502955  ..............g..... 33502936
NW_921618    12772063  ..............g..... 12772044
NT_005403    58305492  ..............g..... 58305473
NC_000002    208096074 ..............g..... 208096055
AC_000134    199946649 ..............g..... 199946630
AC_000045    201857533 ..............g..... 201857514

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 36,330,794
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 23
Length of database: 31,910,071,267
Length adjustment: 17
Effective length of query: 6
Effective length of database: 31,910,045,852
Effective search space: 191460275112
Effective search space used: 191460275112
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)