BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1479
         (24 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583026.1|  Homo sapiens unplaced genomic scaffold scaff...    28     749
gb|CM000498.1|  Homo sapiens chromosome 8, whole genome shot...    28     749
gb|DS990733.1|  Homo sapiens SCAF_1112675837080 genomic scaf...    28     749
gb|CH003503.1|  Homo sapiens chromosome 8, whole genome shot...    28     749
gb|CH003455.1|  Homo sapiens chromosome 8, whole genome shot...    28     749
ref|NW_001839128.2|  Homo sapiens chromosome 8 genomic conti...    28     749
ref|NW_923907.1|  Homo sapiens chromosome 8 genomic contig, ...    28     749
ref|NT_167187.1|  Homo sapiens chromosome 8 genomic contig, ...    28     749
ref|NC_000008.10|  Homo sapiens chromosome 8, GRCh37.p2 prim...    28     749
ref|AC_000140.1|  Homo sapiens chromosome 8, alternate assem...    28     749
ref|AC_000051.1|  Homo sapiens chromosome 8, alternate assem...    28     749

1_0          3        acttcgcttcacctctgcacgt 24
GL583026     6095856  ....g...............c. 6095877
CM000498     33140844 ....g...............c. 33140865
DS990733     4169941  ....g...............c. 4169920
CH003503     43959456 ....g...............c. 43959477
CH003455     33267150 ....g...............c. 33267171
NW_001839128 4170089  ....g...............c. 4170068
NW_923907    22124863 ....g...............c. 22124884
NT_167187    22465528 ....g...............c. 22465549
NC_000008    34607382 ....g...............c. 34607403
AC_000140    33140917 ....g...............c. 33140938
AC_000051    33557025 ....g...............c. 33557046

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 20,016,014
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 24
Length of database: 31,910,071,267
Length adjustment: 18
Effective length of query: 6
Effective length of database: 31,910,044,357
Effective search space: 191460266142
Effective search space used: 191460266142
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)