BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1482
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|GL582980.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583002.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583022.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583186.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583209.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000495.1| Homo sapiens chromosome 5, whole genome shot... 28 907
gb|CM000503.1| Homo sapiens chromosome 13, whole genome sho... 28 907
gb|CM000513.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|DS990664.1| Homo sapiens SCAF_1112675837102 genomic scaf... 28 907
gb|DS990693.1| Homo sapiens SCAF_1112675837243 genomic scaf... 28 907
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|DS990815.1| Homo sapiens SCAF_1112675837190 genomic scaf... 28 907
gb|DS990823.1| Homo sapiens SCAF_1112675837313 genomic scaf... 28 907
gb|DS990839.1| Homo sapiens SCAF_1112675833464 genomic scaf... 28 907
gb|CH003500.1| Homo sapiens chromosome 5, whole genome shot... 28 907
gb|CH003508.1| Homo sapiens chromosome 13, whole genome sho... 28 907
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|CH003470.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 28 907
gb|CH003460.1| Homo sapiens chromosome 13, whole genome sho... 28 907
emb|CT009680.1| Human chromosome X complete sequence 28 907
ref|NW_927727.1| Homo sapiens chromosome X genomic contig, ... 28 907
ref|NW_926128.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NW_001838533.2| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NW_001838954.2| Homo sapiens chromosome 5 genomic conti... 28 907
ref|NW_001842411.2| Homo sapiens chromosome X genomic conti... 28 907
ref|NW_001838967.1| Homo sapiens chromosome 5 genomic conti... 28 907
ref|NW_922784.1| Homo sapiens chromosome 5 genomic contig, ... 28 907
ref|NW_922818.1| Homo sapiens chromosome 5 genomic contig, ... 28 907
ref|NW_925473.1| Homo sapiens chromosome 13 genomic contig,... 28 907
ref|NT_011681.16| Homo sapiens chromosome X genomic contig,... 28 907
ref|NT_023133.13| Homo sapiens chromosome 5 genomic contig,... 28 907
ref|NT_004487.19| Homo sapiens chromosome 1 genomic contig,... 28 907
ref|NT_024524.14| Homo sapiens chromosome 13 genomic contig... 28 907
ref|NW_001838071.2| Homo sapiens chromosome 13 genomic cont... 28 907
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 907
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 28 907
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 28 907
ref|NC_000013.10| Homo sapiens chromosome 13, GRCh37.p2 pri... 28 907
ref|AC_000155.1| Homo sapiens chromosome X, alternate assem... 28 907
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 28 907
ref|AC_000145.1| Homo sapiens chromosome 13, alternate asse... 28 907
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 907
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 28 907
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 28 907
ref|AC_000056.1| Homo sapiens chromosome 13, alternate asse... 28 907
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 907
1_0 1 gcagcagaggccatggatatt 21
CM000491 150172368 ..t................. 150172387
GL582980 43382131 ...t................ 43382150
GL583002 3086531 ................g... 3086550
GL583022 11567125 ..t................. 11567106
GL583186 2464057 ..............c..... 2464076
GL583209 2746205 ........a........... 2746186
CM000495 165113084 ...t................ 165113103
CM000495 172658102 ........a........... 172658121
CM000503 8863946 ................g... 8863965
CM000513 134974096 ..............c..... 134974115
DS990664 26932147 ..t................. 26932128
DS990693 5349502 ...t................ 5349483
CH003496 153468738 ..t................. 153468757
DS990815 3367054 ................g... 3367035
DS990823 1240598 ..............c..... 1240579
DS990839 462229 ........a........... 462248
CH003500 184598691 ........a........... 184598672
CH003508 9008784 ................g... 9008803
CH003518 113702347 ..............c..... 113702366
CH003470 141016533 ..............c..... 141016552
CH003448 151883473 ..t................. 151883492
CH003452 167361437 ...t................ 167361456
CH003452 175019531 ........a........... 175019550
CH003460 8653857 ................g... 8653876
CT009680 144994597 ..............c..... 144994616
NW_927727 116210 ..............c..... 116229
NW_926128 17309524 ..t................. 17309543
NW_001838533 26931774 ..t................. 26931755
NW_001838954 5349542 ...t................ 5349523
NW_001842411 1240590 ..............c..... 1240571
NW_001838967 462273 ........a........... 462292
NW_922784 43675382 ...t................ 43675401
NW_922818 456761 ........a........... 456780
NW_925473 8846603 ................g... 8846622
NT_011681 2455888 ..............c..... 2455907
NT_023133 14826218 ...t................ 14826237
NT_023133 22744698 ........a........... 22744717
NT_004487 30434525 ..t................. 30434544
NT_024524 9022711 ................g... 9022730
NW_001838071 3367177 ................g... 3367158
NC_000001 178945883 ..t................. 178945902
NC_000023 146013212 ..............c..... 146013231
NC_000005 170014945 ...t................ 170014964
NC_000005 177933425 ........a........... 177933444
NC_000013 28042711 ................g... 28042730
AC_000155 134973966 ..............c..... 134973985
AC_000137 165112783 ...t................ 165112802
AC_000137 172657941 ........a........... 172657960
AC_000145 8864072 ................g... 8864091
AC_000133 150173477 ..t................. 150173496
AC_000066 146368147 ..............c..... 146368166
AC_000048 166047366 ...t................ 166047385
AC_000048 173559413 ........a........... 173559432
AC_000056 9111379 ................g... 9111398
AC_000044 152054765 ..t................. 152054784
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 29,161,363
Number of extensions: 55
Number of successful extensions: 55
Number of sequences better than 1000.0: 49
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 55
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)