BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1500
(22 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582990.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583116.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000501.1| Homo sapiens chromosome 11, whole genome sho... 28 907
gb|CM000505.1| Homo sapiens chromosome 15, whole genome sho... 28 907
gb|DS990671.1| Homo sapiens SCAF_1112675837203 genomic scaf... 28 907
gb|DS990704.1| Homo sapiens SCAF_1112675836703 genomic scaf... 28 907
gb|CH003506.1| Homo sapiens chromosome 11, whole genome sho... 28 907
gb|CH003510.1| Homo sapiens chromosome 15, whole genome sho... 28 907
gb|CH003458.1| Homo sapiens chromosome 11, whole genome sho... 28 907
gb|CH003462.1| Homo sapiens chromosome 15, whole genome sho... 28 907
ref|NW_925884.1| Homo sapiens chromosome 15 genomic contig,... 28 907
ref|NW_925106.1| Homo sapiens chromosome 11 genomic contig,... 28 907
ref|NT_010194.17| Homo sapiens chromosome 15 genomic contig... 28 907
ref|NT_167190.1| Homo sapiens chromosome 11 genomic contig,... 28 907
ref|NW_001838218.2| Homo sapiens chromosome 15 genomic cont... 28 907
ref|NW_001838028.2| Homo sapiens chromosome 11 genomic cont... 28 907
ref|NC_000015.9| Homo sapiens chromosome 15, GRCh37.p2 prim... 28 907
ref|NC_000011.9| Homo sapiens chromosome 11, GRCh37.p2 prim... 28 907
ref|AC_000147.1| Homo sapiens chromosome 15, alternate asse... 28 907
ref|AC_000143.1| Homo sapiens chromosome 11, alternate asse... 28 907
ref|AC_000058.1| Homo sapiens chromosome 15, alternate asse... 28 907
ref|AC_000054.1| Homo sapiens chromosome 11, alternate asse... 28 907
1_0 2 aagacatagattgttggtgc 21
GL582990 6543801 ..................t. 6543820
GL583116 4706052 ......g............. 4706071
CM000501 69142747 ......g............. 69142728
CM000505 28592519 ..................t. 28592538
DS990671 22598507 ..................t. 22598488
DS990704 14832150 ......g............. 14832169
CH003506 72092707 ......g............. 72092688
CH003510 30511264 ..................t. 30511283
CH003458 71334528 ......g............. 71334509
CH003462 28098665 ..................t. 28098684
NW_925884 7753402 ..................t. 7753421
NW_925106 18501097 ......g............. 18501078
NT_010194 22552747 ..................t. 22552766
NT_167190 18154213 ......g............. 18154194
NW_001838218 22598756 ..................t. 22598737
NW_001838028 14832132 ......g............. 14832151
NC_000015 51762190 ..................t. 51762209
NC_000011 72848418 ......g............. 72848399
AC_000147 28592254 ..................t. 28592273
AC_000143 69143505 ......g............. 69143486
AC_000058 28655585 ..................t. 28655604
AC_000054 70153021 ......g............. 70153002
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 26,551,170
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 1000.0: 22
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 22
Length of database: 31,910,071,267
Length adjustment: 16
Effective length of query: 6
Effective length of database: 31,910,047,347
Effective search space: 191460284082
Effective search space used: 191460284082
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)