BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1539
         (19 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000492.1|  Homo sapiens chromosome 2, whole genome shot...    29     422
gb|GL582986.1|  Homo sapiens unplaced genomic scaffold scaff...    29     422
gb|DS990654.1|  Homo sapiens SCAF_1112675837378 genomic scaf...    29     422
gb|CH003497.1|  Homo sapiens chromosome 2, whole genome shot...    29     422
gb|CH003449.1|  Homo sapiens chromosome 2, whole genome shot...    29     422
ref|NW_927719.1|  Homo sapiens chromosome 2 genomic contig, ...    29     422
ref|NW_001838769.1|  Homo sapiens chromosome 2 genomic conti...    29     422
ref|NT_022184.15|  Homo sapiens chromosome 2 genomic contig,...    29     422
ref|NC_000002.11|  Homo sapiens chromosome 2, GRCh37.p2 prim...    29     422
ref|AC_000134.1|  Homo sapiens chromosome 2, alternate assem...    29     422
ref|AC_000045.1|  Homo sapiens chromosome 2, alternate assem...    29     422

1_0          1        cagattgctgactcccagc 19
CM000492     46847008 ................... 46847026
GL582986     4610214  ................... 4610196
DS990654     16943364 ................... 16943382
CH003497     49139352 ................... 49139370
CH003449     46766941 ................... 46766959
NW_927719    46880609 ................... 46880627
NW_001838769 16943529 ................... 16943547
NT_022184    25931938 ................... 25931956
NC_000002    47110051 ................... 47110069
AC_000134    46847285 ................... 46847303
AC_000045    46948674 ................... 46948692

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 25,417,843
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)