BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1663
(22 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 749
gb|GL583016.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583021.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583163.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|CM000501.1| Homo sapiens chromosome 11, whole genome sho... 28 749
gb|CM000506.1| Homo sapiens chromosome 16, whole genome sho... 28 749
gb|DS990669.1| Homo sapiens SCAF_1112675837377 genomic scaf... 28 749
gb|DS990670.1| Homo sapiens SCAF_1112675837213 genomic scaf... 28 749
gb|DS990726.1| Homo sapiens SCAF_1112675836616 genomic scaf... 28 749
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 749
gb|CH003505.1| Homo sapiens chromosome 10, whole genome sho... 28 749
gb|CH003506.1| Homo sapiens chromosome 11, whole genome sho... 28 749
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 749
gb|CH003458.1| Homo sapiens chromosome 11, whole genome sho... 28 749
gb|CH003463.1| Homo sapiens chromosome 16, whole genome sho... 28 749
ref|NW_926528.1| Homo sapiens chromosome 16 genomic contig,... 28 749
ref|NW_001838579.2| Homo sapiens chromosome 1 genomic conti... 28 749
ref|NW_001838328.2| Homo sapiens chromosome 16 genomic cont... 28 749
ref|NW_921351.1| Homo sapiens chromosome 1 genomic contig, ... 28 749
ref|NW_925173.1| Homo sapiens chromosome 11 genomic contig,... 28 749
ref|NT_032977.9| Homo sapiens chromosome 1 genomic contig, ... 28 749
ref|NT_010498.15| Homo sapiens chromosome 16 genomic contig... 28 749
ref|NT_033899.8| Homo sapiens chromosome 11 genomic contig,... 28 749
ref|NW_001838042.2| Homo sapiens chromosome 11 genomic cont... 28 749
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 749
ref|NC_000016.9| Homo sapiens chromosome 16, GRCh37.p2 prim... 28 749
ref|NC_000011.9| Homo sapiens chromosome 11, GRCh37.p2 prim... 28 749
ref|AC_000148.1| Homo sapiens chromosome 16, alternate asse... 28 749
ref|AC_000143.1| Homo sapiens chromosome 11, alternate asse... 28 749
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 749
ref|AC_000059.1| Homo sapiens chromosome 16, alternate asse... 28 749
ref|AC_000054.1| Homo sapiens chromosome 11, alternate asse... 28 749
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 749
gb|DS990663.1| Homo sapiens SCAF_1112675837337 genomic scaf... 28 907
gb|DS990762.1| Homo sapiens SCAF_1112675837064 genomic scaf... 28 907
ref|NW_925006.1| Homo sapiens chromosome 11 genomic contig,... 28 907
ref|NW_925106.1| Homo sapiens chromosome 11 genomic contig,... 28 907
ref|NT_167190.1| Homo sapiens chromosome 11 genomic contig,... 28 907
ref|NT_009237.18| Homo sapiens chromosome 11 genomic contig... 28 907
ref|NW_001838022.2| Homo sapiens chromosome 11 genomic cont... 28 907
ref|NW_001838023.1| Homo sapiens chromosome 11 genomic cont... 28 907
1_0 1 cagtccccaacctccaatcact 22
CM000491 56467111 ........t.a........... 56467090
GL583016 6131973 ........t.a........... 6131952
GL583021 8530613 .............t...c.... 8530634
GL583163 3713067 .........t.........c.. 3713088
CM000501 103916115 .............t...c.... 103916094
CM000501 49595291 .........t.......... 49595272
CM000501 49626673 .........t.......... 49626692
CM000501 51378577 .........t.......... 51378558
CM000506 64065390 .........t.........c.. 64065411
DS990669 25327048 ........t.a........... 25327069
DS990670 12769932 .............t...c.... 12769953
DS990726 7233809 .........t.........c.. 7233788
CH003496 56183749 ........t.a........... 56183728
CH003505 63005879 .........t.........c.. 63005858
CH003506 109338162 .............t...c.... 109338141
CH003506 51985219 .........t.......... 51985238
CH003448 57569513 ........t.a........... 57569492
CH003458 104658174 .............t...c.... 104658153
CH003458 49845133 .........t.......... 49845152
CH003458 53562744 .........t.......... 53562725
CH003458 54148439 .........t.......... 54148458
CH003463 59281265 .........t.........c.. 59281286
NW_926528 3848215 .........t.........c.. 3848236
NW_001838579 25327425 ........t.a........... 25327446
NW_001838328 7233805 .........t.........c.. 7233784
NW_921351 32501709 ........t.a........... 32501688
NW_925173 18015215 .............t...c.... 18015194
NT_032977 28327761 ........t.a........... 28327740
NT_010498 31922305 .........t.........c.. 31922326
NT_033899 11553843 .............t...c.... 11553822
NW_001838042 12770054 .............t...c.... 12770075
NC_000001 58355843 ........t.a........... 58355822
NC_000016 78308106 .........t.........c.. 78308127
NC_000011 107991427 .............t...c.... 107991406
NC_000011 49878056 .........t.......... 49878037
NC_000011 49909421 .........t.......... 49909440
NC_000011 55049354 .........t.......... 55049335
AC_000148 64064653 .........t.........c.. 64064674
AC_000143 103916955 .............t...c.... 103916934
AC_000143 49626822 .........t.......... 49626841
AC_000143 51378744 .........t.......... 51378725
AC_000143 51965097 .........t.......... 51965116
AC_000133 56467297 ........t.a........... 56467276
AC_000059 62608301 .........t.........c.. 62608322
AC_000054 105146315 .............t...c.... 105146294
AC_000054 50029142 .........t.......... 50029123
AC_000054 50060725 .........t.......... 50060744
AC_000054 52392780 .........t.......... 52392761
AC_000054 52976300 .........t.......... 52976319
AC_000044 56640851 ........t.a........... 56640830
DS990663 989204 .........t.......... 989185
DS990663 1020586 .........t.......... 1020605
DS990762 762601 .........t.......... 762582
NW_925006 45529466 .........t.......... 45529447
NW_925006 45561049 .........t.......... 45561068
NW_925106 740856 .........t.......... 740837
NW_925106 1324376 .........t.......... 1324395
NT_167190 355149 .........t.......... 355130
NT_009237 49818056 .........t.......... 49818037
NT_009237 49849421 .........t.......... 49849440
NW_001838022 989220 .........t.......... 989201
NW_001838023 762603 .........t.......... 762584
NW_001838023 1348956 .........t.......... 1348975
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 25,542,072
Number of extensions: 63
Number of successful extensions: 63
Number of sequences better than 1000.0: 41
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 63
Length of query: 22
Length of database: 31,910,071,267
Length adjustment: 16
Effective length of query: 6
Effective length of database: 31,910,047,347
Effective search space: 191460284082
Effective search space used: 191460284082
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)