BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1665
(20 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583070.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|DS990851.1| Homo sapiens SCAF_1112675835668 genomic scaf... 28 907
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 907
ref|NW_001839140.1| Homo sapiens chromosome 8 genomic conti... 28 907
ref|NW_923984.1| Homo sapiens chromosome 8 genomic contig, ... 28 907
ref|NT_008046.16| Homo sapiens chromosome 8 genomic contig,... 28 907
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 907
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 907
1_0 1 caggatcctcaaccacccac 20
GL583070 5312254 ....c............... 5312273
CM000498 136145379 ....c............... 136145360
DS990851 1077276 ....c............... 1077257
CH003503 141696906 ....c............... 141696887
CH003455 136322070 ....c............... 136322051
NW_001839140 1077340 ....c............... 1077321
NW_923984 53969688 ....c............... 53969669
NT_008046 54109244 ....c............... 54109225
NC_000008 140835695 ....c............... 140835676
AC_000140 136145472 ....c............... 136145453
AC_000051 137004370 ....c............... 137004351
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 19,220,650
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 20
Length of database: 31,910,071,267
Length adjustment: 14
Effective length of query: 6
Effective length of database: 31,910,050,337
Effective search space: 191460302022
Effective search space used: 191460302022
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)