BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1665
         (20 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583070.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000498.1|  Homo sapiens chromosome 8, whole genome shot...    28     907
gb|DS990851.1|  Homo sapiens SCAF_1112675835668 genomic scaf...    28     907
gb|CH003503.1|  Homo sapiens chromosome 8, whole genome shot...    28     907
gb|CH003455.1|  Homo sapiens chromosome 8, whole genome shot...    28     907
ref|NW_001839140.1|  Homo sapiens chromosome 8 genomic conti...    28     907
ref|NW_923984.1|  Homo sapiens chromosome 8 genomic contig, ...    28     907
ref|NT_008046.16|  Homo sapiens chromosome 8 genomic contig,...    28     907
ref|NC_000008.10|  Homo sapiens chromosome 8, GRCh37.p2 prim...    28     907
ref|AC_000140.1|  Homo sapiens chromosome 8, alternate assem...    28     907
ref|AC_000051.1|  Homo sapiens chromosome 8, alternate assem...    28     907

1_0          1         caggatcctcaaccacccac 20
GL583070     5312254   ....c............... 5312273
CM000498     136145379 ....c............... 136145360
DS990851     1077276   ....c............... 1077257
CH003503     141696906 ....c............... 141696887
CH003455     136322070 ....c............... 136322051
NW_001839140 1077340   ....c............... 1077321
NW_923984    53969688  ....c............... 53969669
NT_008046    54109244  ....c............... 54109225
NC_000008    140835695 ....c............... 140835676
AC_000140    136145472 ....c............... 136145453
AC_000051    137004370 ....c............... 137004351

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 19,220,650
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 20
Length of database: 31,910,071,267
Length adjustment: 14
Effective length of query: 6
Effective length of database: 31,910,050,337
Effective search space: 191460302022
Effective search space used: 191460302022
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)