BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1669
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000491.1|  Homo sapiens chromosome 1, whole genome shot...    28     907
gb|GL583053.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583255.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000496.1|  Homo sapiens chromosome 6, whole genome shot...    28     907
gb|DS990706.1|  Homo sapiens SCAF_1112675837268 genomic scaf...    28     907
gb|CH003496.1|  Homo sapiens chromosome 1, whole genome shot...    28     907
gb|DS990794.1|  Homo sapiens SCAF_1112675837085 genomic scaf...    28     907
gb|CH003501.1|  Homo sapiens chromosome 6, whole genome shot...    28     907
gb|CH003448.1|  Homo sapiens chromosome 1, whole genome shot...    28     907
gb|CH003453.1|  Homo sapiens chromosome 6, whole genome shot...    28     907
ref|NW_926794.1|  Homo sapiens chromosome 1 genomic contig, ...    28     907
ref|NW_001838952.2|  Homo sapiens chromosome 5 genomic conti...    28     907
ref|NW_001838537.2|  Homo sapiens chromosome 1 genomic conti...    28     907
ref|NW_001838985.2|  Homo sapiens chromosome 6 genomic conti...    28     907
ref|NW_922751.1|  Homo sapiens chromosome 5 genomic contig, ...    28     907
ref|NW_923095.1|  Homo sapiens chromosome 6 genomic contig, ...    28     907
ref|NT_007299.13|  Homo sapiens chromosome 6 genomic contig,...    28     907
ref|NT_167186.1|  Homo sapiens chromosome 1 genomic contig, ...    28     907
ref|NC_000001.10|  Homo sapiens chromosome 1, GRCh37.p2 prim...    28     907
ref|NC_000006.11|  Homo sapiens chromosome 6, GRCh37.p2 prim...    28     907
ref|AC_000138.1|  Homo sapiens chromosome 6, alternate assem...    28     907
ref|AC_000137.1|  Homo sapiens chromosome 5, alternate assem...    28     907
ref|AC_000133.1|  Homo sapiens chromosome 1, alternate assem...    28     907
ref|AC_000049.1|  Homo sapiens chromosome 6, alternate assem...    28     907
ref|AC_000048.1|  Homo sapiens chromosome 5, alternate assem...    28     907
ref|AC_000044.1|  Homo sapiens chromosome 1, alternate assem...    28     907
1_0          2         agaacaattatagtaaatca 21
CM000491     186708398 ...t................ 186708417
GL583053     4817619   ...t................ 4817638
GL583255     1876366   ..................g. 1876347
CM000496     61166492  ..................g. 61166511
DS990706     7219291   ...t................ 7219272
CH003496     191135832 ...t................ 191135851
DS990794     4530059   ..................g. 4530040
CH003501     61272022  ..................g. 61272041
CH003448     188759571 ...t................ 188759590
CH003453     60497603  ..................g. 60497622
NW_926794    9423657   ...t................ 9423676
NW_001838952 33847905  .......a............ 33847924
NW_001838537 7219422   ...t................ 7219403
NW_001838985 4530142   ..................g. 4530123
NW_922751    5516336   .......a............ 5516317
NW_923095    2676735   ..................g. 2676754
NT_007299    2106253   ..................g. 2106272
NT_167186    9551856   ...t................ 9551875
NC_000001    216034077 ...t................ 216034096
NC_000006    63986419  ..................g. 63986438
AC_000138    61166366  ..................g. 61166385
AC_000137    100128803 .......a............ 100128784
AC_000133    186709262 ...t................ 186709281
AC_000049    62145884  ..................g. 62145903
AC_000048    100895165 .......a............ 100895146
AC_000044    189257897 ...t................ 189257916
  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 34,149,871
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 1000.0: 26
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 26
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)